Hb_000050_190

Information

Type -
Description -
Location Contig50: 382931-384025
Sequence    

Annotation

kegg
ID rcu:RCOM_1584930
description hypothetical protein
nr
ID XP_002510021.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R6S8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1584930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45734: 381791-384170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000050_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004672_040 0.0670886875 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
3 Hb_000599_180 0.0709040197 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_009548_020 0.0798517172 - - structural constituent of cell wall, putative [Ricinus communis]
5 Hb_005291_050 0.0823535188 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
6 Hb_003168_110 0.0824048021 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
7 Hb_006634_070 0.0833073834 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
8 Hb_006455_120 0.0849478864 - - n6-DNA-methyltransferase, putative [Ricinus communis]
9 Hb_001227_060 0.0865492907 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Jatropha curcas]
10 Hb_000037_190 0.0872902998 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
11 Hb_001635_160 0.0886603425 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
12 Hb_000890_060 0.0888047781 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
13 Hb_000156_010 0.0898577655 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
14 Hb_023344_120 0.0902638711 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
15 Hb_001329_140 0.0916672769 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
16 Hb_011037_030 0.0918738627 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
17 Hb_000213_010 0.0921322674 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
18 Hb_001047_220 0.093094558 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
19 Hb_003504_030 0.0939976657 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
20 Hb_000207_330 0.0944667602 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000050_190 Hb_000050_190 Hb_004672_040 Hb_004672_040 Hb_000050_190--Hb_004672_040 Hb_000599_180 Hb_000599_180 Hb_000050_190--Hb_000599_180 Hb_009548_020 Hb_009548_020 Hb_000050_190--Hb_009548_020 Hb_005291_050 Hb_005291_050 Hb_000050_190--Hb_005291_050 Hb_003168_110 Hb_003168_110 Hb_000050_190--Hb_003168_110 Hb_006634_070 Hb_006634_070 Hb_000050_190--Hb_006634_070 Hb_001163_100 Hb_001163_100 Hb_004672_040--Hb_001163_100 Hb_004672_040--Hb_003168_110 Hb_000207_330 Hb_000207_330 Hb_004672_040--Hb_000207_330 Hb_000192_080 Hb_000192_080 Hb_004672_040--Hb_000192_080 Hb_006915_030 Hb_006915_030 Hb_004672_040--Hb_006915_030 Hb_001001_080 Hb_001001_080 Hb_000599_180--Hb_001001_080 Hb_021409_180 Hb_021409_180 Hb_000599_180--Hb_021409_180 Hb_000340_420 Hb_000340_420 Hb_000599_180--Hb_000340_420 Hb_000808_050 Hb_000808_050 Hb_000599_180--Hb_000808_050 Hb_002542_020 Hb_002542_020 Hb_000599_180--Hb_002542_020 Hb_188063_020 Hb_188063_020 Hb_009548_020--Hb_188063_020 Hb_002835_370 Hb_002835_370 Hb_009548_020--Hb_002835_370 Hb_000072_220 Hb_000072_220 Hb_009548_020--Hb_000072_220 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_012022_090 Hb_012022_090 Hb_009548_020--Hb_012022_090 Hb_012498_010 Hb_012498_010 Hb_005291_050--Hb_012498_010 Hb_001902_030 Hb_001902_030 Hb_005291_050--Hb_001902_030 Hb_004109_080 Hb_004109_080 Hb_005291_050--Hb_004109_080 Hb_000156_010 Hb_000156_010 Hb_005291_050--Hb_000156_010 Hb_002263_020 Hb_002263_020 Hb_005291_050--Hb_002263_020 Hb_000254_090 Hb_000254_090 Hb_005291_050--Hb_000254_090 Hb_001329_140 Hb_001329_140 Hb_003168_110--Hb_001329_140 Hb_000684_250 Hb_000684_250 Hb_003168_110--Hb_000684_250 Hb_003494_020 Hb_003494_020 Hb_003168_110--Hb_003494_020 Hb_000590_050 Hb_000590_050 Hb_003168_110--Hb_000590_050 Hb_000009_560 Hb_000009_560 Hb_003168_110--Hb_000009_560 Hb_000890_060 Hb_000890_060 Hb_003168_110--Hb_000890_060 Hb_006455_120 Hb_006455_120 Hb_006634_070--Hb_006455_120 Hb_023344_120 Hb_023344_120 Hb_006634_070--Hb_023344_120 Hb_011037_030 Hb_011037_030 Hb_006634_070--Hb_011037_030 Hb_001409_020 Hb_001409_020 Hb_006634_070--Hb_001409_020 Hb_006634_070--Hb_000156_010 Hb_005144_160 Hb_005144_160 Hb_006634_070--Hb_005144_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5656 10.7617 10.8783 17.8505 10.3084 16.6879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9208 8.12653 16.5596 9.78398 13.4989

CAGE analysis