Hb_001001_080

Information

Type -
Description -
Location Contig1001: 61927-66626
Sequence    

Annotation

kegg
ID rcu:RCOM_1591230
description hypothetical protein
nr
ID XP_012071682.1
description PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04297 PE=4 SV=1
Gene Ontology
ID GO:0005794
description adenosine trna methylthiotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00222: 61976-66469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_080 0.0 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
2 Hb_000599_180 0.0629991023 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_000205_190 0.0639959088 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
4 Hb_007657_010 0.0674324803 - - ATP binding protein, putative [Ricinus communis]
5 Hb_004097_070 0.0686095052 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
6 Hb_001789_190 0.0695034685 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
7 Hb_004970_190 0.0698976636 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_000866_010 0.0707648539 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007007_060 0.0721731489 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
10 Hb_000029_050 0.075386268 - - expressed protein, putative [Ricinus communis]
11 Hb_002997_080 0.0774485556 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
12 Hb_002235_250 0.080378054 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
13 Hb_019280_030 0.0804166328 - - -
14 Hb_007075_040 0.0831436324 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
15 Hb_005993_050 0.0843412862 - - Protein AFR, putative [Ricinus communis]
16 Hb_000260_100 0.0852890981 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000883_020 0.0861051077 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
18 Hb_001975_090 0.0861114191 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
19 Hb_000346_060 0.0872446885 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
20 Hb_004841_010 0.0887634697 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001001_080 Hb_001001_080 Hb_000599_180 Hb_000599_180 Hb_001001_080--Hb_000599_180 Hb_000205_190 Hb_000205_190 Hb_001001_080--Hb_000205_190 Hb_007657_010 Hb_007657_010 Hb_001001_080--Hb_007657_010 Hb_004097_070 Hb_004097_070 Hb_001001_080--Hb_004097_070 Hb_001789_190 Hb_001789_190 Hb_001001_080--Hb_001789_190 Hb_004970_190 Hb_004970_190 Hb_001001_080--Hb_004970_190 Hb_000050_190 Hb_000050_190 Hb_000599_180--Hb_000050_190 Hb_021409_180 Hb_021409_180 Hb_000599_180--Hb_021409_180 Hb_000340_420 Hb_000340_420 Hb_000599_180--Hb_000340_420 Hb_000808_050 Hb_000808_050 Hb_000599_180--Hb_000808_050 Hb_002542_020 Hb_002542_020 Hb_000599_180--Hb_002542_020 Hb_001158_070 Hb_001158_070 Hb_000205_190--Hb_001158_070 Hb_000205_190--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_000205_190--Hb_000804_040 Hb_008165_060 Hb_008165_060 Hb_000205_190--Hb_008165_060 Hb_007007_120 Hb_007007_120 Hb_000205_190--Hb_007007_120 Hb_001902_030 Hb_001902_030 Hb_007657_010--Hb_001902_030 Hb_008221_180 Hb_008221_180 Hb_007657_010--Hb_008221_180 Hb_000346_060 Hb_000346_060 Hb_007657_010--Hb_000346_060 Hb_002263_020 Hb_002263_020 Hb_007657_010--Hb_002263_020 Hb_000343_250 Hb_000343_250 Hb_007657_010--Hb_000343_250 Hb_007657_010--Hb_004097_070 Hb_004097_070--Hb_001789_190 Hb_000200_380 Hb_000200_380 Hb_004097_070--Hb_000200_380 Hb_004097_070--Hb_000346_060 Hb_019280_030 Hb_019280_030 Hb_004097_070--Hb_019280_030 Hb_001635_040 Hb_001635_040 Hb_004097_070--Hb_001635_040 Hb_025557_050 Hb_025557_050 Hb_001789_190--Hb_025557_050 Hb_132840_110 Hb_132840_110 Hb_001789_190--Hb_132840_110 Hb_017151_010 Hb_017151_010 Hb_001789_190--Hb_017151_010 Hb_001021_220 Hb_001021_220 Hb_001789_190--Hb_001021_220 Hb_012395_230 Hb_012395_230 Hb_004970_190--Hb_012395_230 Hb_004970_190--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004970_190--Hb_003513_010 Hb_000869_020 Hb_000869_020 Hb_004970_190--Hb_000869_020 Hb_000753_240 Hb_000753_240 Hb_004970_190--Hb_000753_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7304 9.89949 14.2769 12.1104 14.3128 16.338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9845 12.3152 13.3586 6.7649 15.9346

CAGE analysis