Hb_012395_230

Information

Type -
Description -
Location Contig12395: 114881-120133
Sequence    

Annotation

kegg
ID rcu:RCOM_1217360
description Ras-GTPase-activating protein-binding protein, putative
nr
ID XP_002528349.1
description Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
swissprot
ID O94260
description Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1
trembl
ID B9SQT0
description Ras-GTPase-activating protein-binding protein, putative OS=Ricinus communis GN=RCOM_1217360 PE=4 SV=1
Gene Ontology
ID GO:0005622
description g3bp-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07287: 115396-120169 , PASA_asmbl_07288: 118282-118876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_230 0.0 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
2 Hb_004970_190 0.0529605356 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_000053_110 0.0670689053 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008642_040 0.068492683 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
5 Hb_002780_020 0.0693163917 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 [Jatropha curcas]
6 Hb_000883_020 0.0697659541 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
7 Hb_003513_010 0.071290693 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
8 Hb_000331_110 0.0749670194 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
9 Hb_000804_040 0.0753481536 - - protein with unknown function [Ricinus communis]
10 Hb_011930_020 0.0768887923 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
11 Hb_007007_120 0.0769819769 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
12 Hb_019280_030 0.0782573078 - - -
13 Hb_065500_060 0.0783980587 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
14 Hb_000753_240 0.0795728686 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
15 Hb_000699_030 0.0798148137 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
16 Hb_002592_060 0.0813930551 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002235_250 0.0820482287 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
18 Hb_000205_190 0.0832726193 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
19 Hb_014834_150 0.0835355234 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_029879_010 0.0837942267 - - ribosomal pseudouridine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_012395_230 Hb_012395_230 Hb_004970_190 Hb_004970_190 Hb_012395_230--Hb_004970_190 Hb_000053_110 Hb_000053_110 Hb_012395_230--Hb_000053_110 Hb_008642_040 Hb_008642_040 Hb_012395_230--Hb_008642_040 Hb_002780_020 Hb_002780_020 Hb_012395_230--Hb_002780_020 Hb_000883_020 Hb_000883_020 Hb_012395_230--Hb_000883_020 Hb_003513_010 Hb_003513_010 Hb_012395_230--Hb_003513_010 Hb_000205_190 Hb_000205_190 Hb_004970_190--Hb_000205_190 Hb_007007_120 Hb_007007_120 Hb_004970_190--Hb_007007_120 Hb_004970_190--Hb_003513_010 Hb_000869_020 Hb_000869_020 Hb_004970_190--Hb_000869_020 Hb_000753_240 Hb_000753_240 Hb_004970_190--Hb_000753_240 Hb_000866_010 Hb_000866_010 Hb_000053_110--Hb_000866_010 Hb_000053_110--Hb_004970_190 Hb_005271_220 Hb_005271_220 Hb_000053_110--Hb_005271_220 Hb_000261_020 Hb_000261_020 Hb_000053_110--Hb_000261_020 Hb_010222_020 Hb_010222_020 Hb_000053_110--Hb_010222_020 Hb_003440_060 Hb_003440_060 Hb_008642_040--Hb_003440_060 Hb_000331_110 Hb_000331_110 Hb_008642_040--Hb_000331_110 Hb_001186_090 Hb_001186_090 Hb_008642_040--Hb_001186_090 Hb_000804_040 Hb_000804_040 Hb_008642_040--Hb_000804_040 Hb_004109_280 Hb_004109_280 Hb_008642_040--Hb_004109_280 Hb_002780_020--Hb_004970_190 Hb_000346_060 Hb_000346_060 Hb_002780_020--Hb_000346_060 Hb_001123_260 Hb_001123_260 Hb_002780_020--Hb_001123_260 Hb_000699_030 Hb_000699_030 Hb_002780_020--Hb_000699_030 Hb_007632_030 Hb_007632_030 Hb_002780_020--Hb_007632_030 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_002997_080 Hb_002997_080 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000230_560 Hb_000230_560 Hb_000883_020--Hb_000230_560 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_004052_080 Hb_004052_080 Hb_003513_010--Hb_004052_080 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_014834_150 Hb_014834_150 Hb_003513_010--Hb_014834_150 Hb_003513_010--Hb_000869_020 Hb_003861_060 Hb_003861_060 Hb_003513_010--Hb_003861_060 Hb_003513_010--Hb_007007_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.39803 6.05685 10.3692 5.81525 7.39731 9.6999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.7599 9.23047 6.23744 4.95688 9.36196

CAGE analysis