Hb_003440_060

Information

Type -
Description -
Location Contig3440: 40488-44464
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010556mg
description hypothetical protein
nr
ID XP_012092901.1
description PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
swissprot
ID Q9JHB5
description Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1 SV=1
trembl
ID A0A067JJ71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05804 PE=4 SV=1
Gene Ontology
ID GO:0043565
description translin-associated protein x

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35930: 40324-44503 , PASA_asmbl_35931: 40324-41535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003440_060 0.0 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
2 Hb_002893_070 0.0512504548 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
3 Hb_008642_040 0.0680893278 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
4 Hb_000723_100 0.0736846612 - - phosphoglycerate kinase, putative [Ricinus communis]
5 Hb_004032_410 0.0802969561 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
6 Hb_004310_140 0.0840089029 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
7 Hb_001489_050 0.0860686115 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
8 Hb_000080_120 0.0884204431 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
9 Hb_000740_050 0.0884454977 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
10 Hb_004109_280 0.0929348574 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
11 Hb_000076_130 0.0938575623 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
12 Hb_000224_160 0.0946689673 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_012395_230 0.095114167 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
14 Hb_000134_310 0.0960756056 - - PREDICTED: protein gamma response 1 isoform X1 [Jatropha curcas]
15 Hb_022693_140 0.0962817026 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
16 Hb_000665_160 0.0963826335 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X1 [Jatropha curcas]
17 Hb_004330_090 0.0971869503 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
18 Hb_021346_030 0.0973925003 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
19 Hb_004218_280 0.0975022884 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
20 Hb_069662_010 0.0989891269 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]

Gene co-expression network

sample Hb_003440_060 Hb_003440_060 Hb_002893_070 Hb_002893_070 Hb_003440_060--Hb_002893_070 Hb_008642_040 Hb_008642_040 Hb_003440_060--Hb_008642_040 Hb_000723_100 Hb_000723_100 Hb_003440_060--Hb_000723_100 Hb_004032_410 Hb_004032_410 Hb_003440_060--Hb_004032_410 Hb_004310_140 Hb_004310_140 Hb_003440_060--Hb_004310_140 Hb_001489_050 Hb_001489_050 Hb_003440_060--Hb_001489_050 Hb_000080_120 Hb_000080_120 Hb_002893_070--Hb_000080_120 Hb_022693_140 Hb_022693_140 Hb_002893_070--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_002893_070--Hb_000224_160 Hb_002893_070--Hb_000723_100 Hb_003939_050 Hb_003939_050 Hb_002893_070--Hb_003939_050 Hb_012395_230 Hb_012395_230 Hb_008642_040--Hb_012395_230 Hb_000331_110 Hb_000331_110 Hb_008642_040--Hb_000331_110 Hb_001186_090 Hb_001186_090 Hb_008642_040--Hb_001186_090 Hb_000804_040 Hb_000804_040 Hb_008642_040--Hb_000804_040 Hb_004109_280 Hb_004109_280 Hb_008642_040--Hb_004109_280 Hb_000723_100--Hb_004310_140 Hb_000665_160 Hb_000665_160 Hb_000723_100--Hb_000665_160 Hb_000740_050 Hb_000740_050 Hb_000723_100--Hb_000740_050 Hb_000061_020 Hb_000061_020 Hb_000723_100--Hb_000061_020 Hb_150651_030 Hb_150651_030 Hb_004032_410--Hb_150651_030 Hb_004032_410--Hb_001489_050 Hb_000544_010 Hb_000544_010 Hb_004032_410--Hb_000544_010 Hb_000076_130 Hb_000076_130 Hb_004032_410--Hb_000076_130 Hb_000915_080 Hb_000915_080 Hb_004032_410--Hb_000915_080 Hb_000797_040 Hb_000797_040 Hb_004310_140--Hb_000797_040 Hb_002205_030 Hb_002205_030 Hb_004310_140--Hb_002205_030 Hb_003038_200 Hb_003038_200 Hb_004310_140--Hb_003038_200 Hb_002592_060 Hb_002592_060 Hb_004310_140--Hb_002592_060 Hb_000174_170 Hb_000174_170 Hb_004310_140--Hb_000174_170 Hb_001489_050--Hb_002893_070 Hb_000181_240 Hb_000181_240 Hb_001489_050--Hb_000181_240 Hb_001489_050--Hb_000080_120 Hb_021346_030 Hb_021346_030 Hb_001489_050--Hb_021346_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1708 11.6481 25.7172 15.7033 29.7077 32.449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2619 23.1177 11.1672 15.7344 32.7356

CAGE analysis