Hb_001489_050

Information

Type -
Description -
Location Contig1489: 34011-38863
Sequence    

Annotation

kegg
ID cit:102613871
description protein TWIN LOV 1-like
nr
ID XP_012091946.1
description PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
swissprot
ID O64511
description Protein TWIN LOV 1 OS=Arabidopsis thaliana GN=TLP1 PE=1 SV=2
trembl
ID A0A067JBQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21702 PE=4 SV=1
Gene Ontology
ID GO:0000155
description protein twin lov 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12354: 34229-37422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_050 0.0 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
2 Hb_004032_410 0.0809918121 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
3 Hb_003440_060 0.0860686115 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
4 Hb_002893_070 0.0919864618 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
5 Hb_000181_240 0.0956932473 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
6 Hb_000080_120 0.095718491 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
7 Hb_021346_030 0.1011769547 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
8 Hb_048141_020 0.1028061939 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
9 Hb_000076_130 0.1054309173 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
10 Hb_000224_160 0.1066086463 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_023278_010 0.1090115346 - - Chaperone protein DnaJ [Glycine soja]
12 Hb_002163_040 0.111775862 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001205_300 0.113284888 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
14 Hb_002374_240 0.113676144 - - nucellin, putative [Ricinus communis]
15 Hb_000948_170 0.1140186248 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
16 Hb_000816_100 0.1143394623 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_022693_140 0.1156870274 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
18 Hb_003038_200 0.1172874191 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
19 Hb_006117_040 0.1185690853 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
20 Hb_000174_170 0.1198252317 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001489_050 Hb_001489_050 Hb_004032_410 Hb_004032_410 Hb_001489_050--Hb_004032_410 Hb_003440_060 Hb_003440_060 Hb_001489_050--Hb_003440_060 Hb_002893_070 Hb_002893_070 Hb_001489_050--Hb_002893_070 Hb_000181_240 Hb_000181_240 Hb_001489_050--Hb_000181_240 Hb_000080_120 Hb_000080_120 Hb_001489_050--Hb_000080_120 Hb_021346_030 Hb_021346_030 Hb_001489_050--Hb_021346_030 Hb_150651_030 Hb_150651_030 Hb_004032_410--Hb_150651_030 Hb_004032_410--Hb_003440_060 Hb_000544_010 Hb_000544_010 Hb_004032_410--Hb_000544_010 Hb_000076_130 Hb_000076_130 Hb_004032_410--Hb_000076_130 Hb_000915_080 Hb_000915_080 Hb_004032_410--Hb_000915_080 Hb_003440_060--Hb_002893_070 Hb_008642_040 Hb_008642_040 Hb_003440_060--Hb_008642_040 Hb_000723_100 Hb_000723_100 Hb_003440_060--Hb_000723_100 Hb_004310_140 Hb_004310_140 Hb_003440_060--Hb_004310_140 Hb_002893_070--Hb_000080_120 Hb_022693_140 Hb_022693_140 Hb_002893_070--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_002893_070--Hb_000224_160 Hb_002893_070--Hb_000723_100 Hb_003939_050 Hb_003939_050 Hb_002893_070--Hb_003939_050 Hb_001279_030 Hb_001279_030 Hb_000181_240--Hb_001279_030 Hb_000346_060 Hb_000346_060 Hb_000181_240--Hb_000346_060 Hb_000184_170 Hb_000184_170 Hb_000181_240--Hb_000184_170 Hb_002374_240 Hb_002374_240 Hb_000181_240--Hb_002374_240 Hb_000181_240--Hb_000224_160 Hb_000679_020 Hb_000679_020 Hb_000181_240--Hb_000679_020 Hb_002163_040 Hb_002163_040 Hb_000080_120--Hb_002163_040 Hb_000804_040 Hb_000804_040 Hb_000080_120--Hb_000804_040 Hb_000080_120--Hb_000224_160 Hb_000080_120--Hb_000076_130 Hb_012022_150 Hb_012022_150 Hb_000080_120--Hb_012022_150 Hb_000948_170 Hb_000948_170 Hb_021346_030--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_021346_030--Hb_000627_250 Hb_031284_070 Hb_031284_070 Hb_021346_030--Hb_031284_070 Hb_069662_010 Hb_069662_010 Hb_021346_030--Hb_069662_010 Hb_021346_030--Hb_000080_120 Hb_000816_100 Hb_000816_100 Hb_021346_030--Hb_000816_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1307 2.67186 7.52256 3.8098 10.1497 9.18641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.82778 5.44962 4.30509 3.92492 11.3186

CAGE analysis