Hb_002374_240

Information

Type -
Description -
Location Contig2374: 207573-211142
Sequence    

Annotation

kegg
ID rcu:RCOM_0563790
description nucellin, putative
nr
ID XP_002520345.1
description nucellin, putative [Ricinus communis]
swissprot
ID Q0IU52
description Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1
trembl
ID B9S2X6
description Nucellin, putative OS=Ricinus communis GN=RCOM_0563790 PE=4 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase asp1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24876: 207786-210945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_240 0.0 - - nucellin, putative [Ricinus communis]
2 Hb_000200_030 0.0732869467 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
3 Hb_000184_170 0.0794761623 - - hypothetical protein RCOM_1213430 [Ricinus communis]
4 Hb_000224_160 0.0805414711 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_001584_200 0.0820370209 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
6 Hb_000181_240 0.0858700377 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
7 Hb_000295_080 0.0895605421 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
8 Hb_001019_190 0.0932825538 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001279_030 0.0935624314 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
10 Hb_004994_380 0.0937682342 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
11 Hb_000076_130 0.0957948374 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
12 Hb_010710_070 0.0967428996 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
13 Hb_000080_120 0.0968403177 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
14 Hb_022693_140 0.0969345237 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
15 Hb_008221_180 0.097189555 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
16 Hb_000556_090 0.0993879543 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
17 Hb_004884_070 0.0994786785 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
18 Hb_188063_020 0.1008367005 - - conserved hypothetical protein [Ricinus communis]
19 Hb_024570_010 0.1009778922 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
20 Hb_028912_050 0.1040988724 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_240 Hb_002374_240 Hb_000200_030 Hb_000200_030 Hb_002374_240--Hb_000200_030 Hb_000184_170 Hb_000184_170 Hb_002374_240--Hb_000184_170 Hb_000224_160 Hb_000224_160 Hb_002374_240--Hb_000224_160 Hb_001584_200 Hb_001584_200 Hb_002374_240--Hb_001584_200 Hb_000181_240 Hb_000181_240 Hb_002374_240--Hb_000181_240 Hb_000295_080 Hb_000295_080 Hb_002374_240--Hb_000295_080 Hb_000200_030--Hb_000224_160 Hb_000200_030--Hb_000184_170 Hb_004994_380 Hb_004994_380 Hb_000200_030--Hb_004994_380 Hb_000915_260 Hb_000915_260 Hb_000200_030--Hb_000915_260 Hb_022693_140 Hb_022693_140 Hb_000200_030--Hb_022693_140 Hb_003153_010 Hb_003153_010 Hb_000184_170--Hb_003153_010 Hb_000346_060 Hb_000346_060 Hb_000184_170--Hb_000346_060 Hb_001700_010 Hb_001700_010 Hb_000184_170--Hb_001700_010 Hb_008959_010 Hb_008959_010 Hb_000184_170--Hb_008959_010 Hb_000184_170--Hb_022693_140 Hb_001279_030 Hb_001279_030 Hb_000184_170--Hb_001279_030 Hb_000224_160--Hb_001584_200 Hb_012022_150 Hb_012022_150 Hb_000224_160--Hb_012022_150 Hb_000224_160--Hb_022693_140 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_002163_040 Hb_002163_040 Hb_000224_160--Hb_002163_040 Hb_000224_160--Hb_000184_170 Hb_003376_230 Hb_003376_230 Hb_001584_200--Hb_003376_230 Hb_000462_090 Hb_000462_090 Hb_001584_200--Hb_000462_090 Hb_001584_200--Hb_012022_150 Hb_000172_580 Hb_000172_580 Hb_001584_200--Hb_000172_580 Hb_000181_240--Hb_001279_030 Hb_000181_240--Hb_000346_060 Hb_000181_240--Hb_000184_170 Hb_000181_240--Hb_000224_160 Hb_000679_020 Hb_000679_020 Hb_000181_240--Hb_000679_020 Hb_001049_110 Hb_001049_110 Hb_000295_080--Hb_001049_110 Hb_000295_080--Hb_000184_170 Hb_000556_090 Hb_000556_090 Hb_000295_080--Hb_000556_090 Hb_001482_040 Hb_001482_040 Hb_000295_080--Hb_001482_040 Hb_000288_030 Hb_000288_030 Hb_000295_080--Hb_000288_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.37667 3.52705 6.76313 6.42834 10.2954 10.3635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.88099 7.22532 10.4609 4.50777 13.6682

CAGE analysis