Hb_012022_150

Information

Type -
Description -
Location Contig12022: 199164-208373
Sequence    

Annotation

kegg
ID rcu:RCOM_0643930
description hypothetical protein
nr
ID XP_012087869.1
description PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
swissprot
ID B6IDH3
description Protein root UVB sensitive 5 OS=Arabidopsis thaliana GN=RUS5 PE=2 SV=1
trembl
ID A0A067JNR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25022 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06283: 200812-205490 , PASA_asmbl_06284: 206169-208007
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_150 0.0 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
2 Hb_022693_140 0.0499162246 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
3 Hb_000224_160 0.0635695426 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_002163_040 0.06814811 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003029_070 0.070916232 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000804_040 0.0731918073 - - protein with unknown function [Ricinus communis]
7 Hb_000753_240 0.0753179985 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
8 Hb_001584_200 0.0778450294 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
9 Hb_000184_170 0.0826848481 - - hypothetical protein RCOM_1213430 [Ricinus communis]
10 Hb_001322_140 0.0829902642 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
11 Hb_000080_120 0.0832366889 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
12 Hb_011716_130 0.0843850814 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
13 Hb_002876_220 0.0853227829 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
14 Hb_000137_040 0.0855410344 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
15 Hb_004970_190 0.0861737274 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_003513_010 0.090285766 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
17 Hb_001700_010 0.09039151 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
18 Hb_000227_170 0.0922773287 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000465_090 0.0937755942 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
20 Hb_012395_230 0.0947230778 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012022_150 Hb_012022_150 Hb_022693_140 Hb_022693_140 Hb_012022_150--Hb_022693_140 Hb_000224_160 Hb_000224_160 Hb_012022_150--Hb_000224_160 Hb_002163_040 Hb_002163_040 Hb_012022_150--Hb_002163_040 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_000804_040 Hb_000804_040 Hb_012022_150--Hb_000804_040 Hb_000753_240 Hb_000753_240 Hb_012022_150--Hb_000753_240 Hb_022693_140--Hb_000804_040 Hb_022693_140--Hb_000224_160 Hb_029879_010 Hb_029879_010 Hb_022693_140--Hb_029879_010 Hb_000184_170 Hb_000184_170 Hb_022693_140--Hb_000184_170 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040 Hb_001584_200 Hb_001584_200 Hb_000224_160--Hb_001584_200 Hb_011716_130 Hb_011716_130 Hb_000224_160--Hb_011716_130 Hb_000224_160--Hb_002163_040 Hb_000224_160--Hb_000184_170 Hb_000080_120 Hb_000080_120 Hb_002163_040--Hb_000080_120 Hb_006117_040 Hb_006117_040 Hb_002163_040--Hb_006117_040 Hb_002163_040--Hb_001584_200 Hb_002163_040--Hb_022693_140 Hb_003029_070--Hb_000753_240 Hb_002876_220 Hb_002876_220 Hb_003029_070--Hb_002876_220 Hb_000300_180 Hb_000300_180 Hb_003029_070--Hb_000300_180 Hb_004970_190 Hb_004970_190 Hb_003029_070--Hb_004970_190 Hb_003029_070--Hb_000804_040 Hb_000205_190 Hb_000205_190 Hb_000804_040--Hb_000205_190 Hb_000804_040--Hb_004970_190 Hb_001322_140 Hb_001322_140 Hb_000804_040--Hb_001322_140 Hb_000804_040--Hb_000753_240 Hb_000753_240--Hb_004970_190 Hb_000866_010 Hb_000866_010 Hb_000753_240--Hb_000866_010 Hb_000866_260 Hb_000866_260 Hb_000753_240--Hb_000866_260 Hb_002013_020 Hb_002013_020 Hb_000753_240--Hb_002013_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.17837 1.22866 4.41933 1.82909 3.03745 3.33752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85549 3.78689 3.09083 1.86014 4.82222

CAGE analysis