Hb_000300_180

Information

Type -
Description -
Location Contig300: 164264-176042
Sequence    

Annotation

kegg
ID rcu:RCOM_1320990
description transcription initiation factor brf1, putative
nr
ID XP_002525676.1
description transcription initiation factor brf1, putative [Ricinus communis]
swissprot
ID P46070
description Transcription factor IIIB 70 kDa subunit OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TDS4 PE=3 SV=2
trembl
ID B9SI57
description Transcription initiation factor brf1, putative OS=Ricinus communis GN=RCOM_1320990 PE=4 SV=1
Gene Ontology
ID GO:0000126
description transcription factor iiib 90 kda subunit-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31557: 164209-176206 , PASA_asmbl_31558: 174246-176182 , PASA_asmbl_31559: 173250-175945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_180 0.0 - - transcription initiation factor brf1, putative [Ricinus communis]
2 Hb_000757_030 0.0690172633 - - radical sam protein, putative [Ricinus communis]
3 Hb_003029_070 0.06943093 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000640_160 0.083313686 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
5 Hb_002876_220 0.0851480785 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
6 Hb_000190_030 0.0869389614 - - PREDICTED: BEACH domain-containing protein lvsA-like [Pyrus x bretschneideri]
7 Hb_000304_070 0.0873329265 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
8 Hb_000445_070 0.0891080563 - - PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
9 Hb_001824_080 0.0900735347 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
10 Hb_000227_170 0.0941181708 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_071188_010 0.0941687893 - - hypothetical protein POPTR_0013s025001g, partial [Populus trichocarpa]
12 Hb_003038_200 0.0967693487 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
13 Hb_001935_100 0.0996543942 - - structural molecule, putative [Ricinus communis]
14 Hb_000804_040 0.101263555 - - protein with unknown function [Ricinus communis]
15 Hb_005542_130 0.1015654455 - - PREDICTED: uncharacterized protein LOC105649174 [Jatropha curcas]
16 Hb_000254_100 0.1025373991 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
17 Hb_000221_140 0.1027716307 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_005389_170 0.1034551502 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
19 Hb_004970_190 0.1035314974 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_003225_020 0.1045120841 transcription factor TF Family: HB PREDICTED: homeobox protein HAT3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_180 Hb_000300_180 Hb_000757_030 Hb_000757_030 Hb_000300_180--Hb_000757_030 Hb_003029_070 Hb_003029_070 Hb_000300_180--Hb_003029_070 Hb_000640_160 Hb_000640_160 Hb_000300_180--Hb_000640_160 Hb_002876_220 Hb_002876_220 Hb_000300_180--Hb_002876_220 Hb_000190_030 Hb_000190_030 Hb_000300_180--Hb_000190_030 Hb_000304_070 Hb_000304_070 Hb_000300_180--Hb_000304_070 Hb_005542_130 Hb_005542_130 Hb_000757_030--Hb_005542_130 Hb_000254_100 Hb_000254_100 Hb_000757_030--Hb_000254_100 Hb_000757_030--Hb_000304_070 Hb_003363_070 Hb_003363_070 Hb_000757_030--Hb_003363_070 Hb_010931_070 Hb_010931_070 Hb_000757_030--Hb_010931_070 Hb_000753_240 Hb_000753_240 Hb_003029_070--Hb_000753_240 Hb_003029_070--Hb_002876_220 Hb_012022_150 Hb_012022_150 Hb_003029_070--Hb_012022_150 Hb_004970_190 Hb_004970_190 Hb_003029_070--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_003029_070--Hb_000804_040 Hb_003225_020 Hb_003225_020 Hb_000640_160--Hb_003225_020 Hb_005731_110 Hb_005731_110 Hb_000640_160--Hb_005731_110 Hb_001619_050 Hb_001619_050 Hb_000640_160--Hb_001619_050 Hb_032202_080 Hb_032202_080 Hb_000640_160--Hb_032202_080 Hb_004096_240 Hb_004096_240 Hb_000640_160--Hb_004096_240 Hb_138435_010 Hb_138435_010 Hb_000640_160--Hb_138435_010 Hb_002876_220--Hb_012022_150 Hb_007002_020 Hb_007002_020 Hb_002876_220--Hb_007002_020 Hb_000051_060 Hb_000051_060 Hb_002876_220--Hb_000051_060 Hb_001935_100 Hb_001935_100 Hb_002876_220--Hb_001935_100 Hb_003038_200 Hb_003038_200 Hb_000190_030--Hb_003038_200 Hb_000190_030--Hb_003029_070 Hb_071188_010 Hb_071188_010 Hb_000190_030--Hb_071188_010 Hb_000062_370 Hb_000062_370 Hb_000190_030--Hb_000062_370 Hb_000224_160 Hb_000224_160 Hb_000190_030--Hb_000224_160 Hb_010863_050 Hb_010863_050 Hb_000304_070--Hb_010863_050 Hb_001623_270 Hb_001623_270 Hb_000304_070--Hb_001623_270 Hb_001824_080 Hb_001824_080 Hb_000304_070--Hb_001824_080 Hb_005588_080 Hb_005588_080 Hb_000304_070--Hb_005588_080 Hb_000304_070--Hb_000254_100 Hb_000207_300 Hb_000207_300 Hb_000304_070--Hb_000207_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.54724 6.41407 17.9734 4.0849 7.85464 7.48949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.3454 7.94014 6.94931 6.39695 13.5026

CAGE analysis