Hb_010931_070

Information

Type -
Description -
Location Contig10931: 57228-73060
Sequence    

Annotation

kegg
ID rcu:RCOM_1174070
description cleavage and polyadenylation specificity factor, putative
nr
ID XP_012088264.1
description PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9LKF9
description Cleavage and polyadenylation specificity factor subunit 2 OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
trembl
ID A0A067JVV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25772 PE=4 SV=1
Gene Ontology
ID GO:0005847
description cleavage and polyadenylation specificity factor subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02824: 59140-64487 , PASA_asmbl_02825: 64868-71519
cDNA
(Sanger)
(ID:Location)		 015_N16.ab1: 70490-71519 , 016_F06.ab1: 63755-64487 , 047_G23.ab1: 63752-63861

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010931_070 0.0 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
2 Hb_170416_010 0.0670284343 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
3 Hb_001025_120 0.0727133939 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
4 Hb_004052_080 0.0731947183 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000567_070 0.0759550254 - - autophagy protein, putative [Ricinus communis]
6 Hb_005000_170 0.0784106969 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
7 Hb_000144_070 0.0791884628 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003861_060 0.0798726641 - - PREDICTED: treacle protein [Jatropha curcas]
9 Hb_000028_520 0.0798982033 - - hypothetical protein L484_025125 [Morus notabilis]
10 Hb_000136_110 0.0800756284 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
11 Hb_000757_030 0.0800995926 - - radical sam protein, putative [Ricinus communis]
12 Hb_001761_120 0.0807363227 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
13 Hb_000254_100 0.0810091667 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
14 Hb_171900_040 0.081757357 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
15 Hb_003531_080 0.0819036035 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
16 Hb_002876_230 0.0827340909 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
17 Hb_012506_030 0.0846574291 - - AP-2 complex subunit alpha, putative [Ricinus communis]
18 Hb_001226_150 0.0850740274 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
19 Hb_003363_070 0.0859599976 - - -
20 Hb_007007_120 0.0860672436 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010931_070 Hb_010931_070 Hb_170416_010 Hb_170416_010 Hb_010931_070--Hb_170416_010 Hb_001025_120 Hb_001025_120 Hb_010931_070--Hb_001025_120 Hb_004052_080 Hb_004052_080 Hb_010931_070--Hb_004052_080 Hb_000567_070 Hb_000567_070 Hb_010931_070--Hb_000567_070 Hb_005000_170 Hb_005000_170 Hb_010931_070--Hb_005000_170 Hb_000144_070 Hb_000144_070 Hb_010931_070--Hb_000144_070 Hb_001761_120 Hb_001761_120 Hb_170416_010--Hb_001761_120 Hb_001226_150 Hb_001226_150 Hb_170416_010--Hb_001226_150 Hb_007765_100 Hb_007765_100 Hb_170416_010--Hb_007765_100 Hb_007007_120 Hb_007007_120 Hb_170416_010--Hb_007007_120 Hb_003531_080 Hb_003531_080 Hb_170416_010--Hb_003531_080 Hb_018790_020 Hb_018790_020 Hb_001025_120--Hb_018790_020 Hb_002716_060 Hb_002716_060 Hb_001025_120--Hb_002716_060 Hb_000676_070 Hb_000676_070 Hb_001025_120--Hb_000676_070 Hb_007894_150 Hb_007894_150 Hb_001025_120--Hb_007894_150 Hb_004807_020 Hb_004807_020 Hb_001025_120--Hb_004807_020 Hb_000028_520 Hb_000028_520 Hb_001025_120--Hb_000028_520 Hb_004052_080--Hb_007007_120 Hb_000339_040 Hb_000339_040 Hb_004052_080--Hb_000339_040 Hb_003513_010 Hb_003513_010 Hb_004052_080--Hb_003513_010 Hb_002876_230 Hb_002876_230 Hb_004052_080--Hb_002876_230 Hb_003428_010 Hb_003428_010 Hb_004052_080--Hb_003428_010 Hb_003861_060 Hb_003861_060 Hb_004052_080--Hb_003861_060 Hb_007821_020 Hb_007821_020 Hb_000567_070--Hb_007821_020 Hb_000390_230 Hb_000390_230 Hb_000567_070--Hb_000390_230 Hb_000254_100 Hb_000254_100 Hb_000567_070--Hb_000254_100 Hb_003186_020 Hb_003186_020 Hb_000567_070--Hb_003186_020 Hb_006483_110 Hb_006483_110 Hb_000567_070--Hb_006483_110 Hb_000115_280 Hb_000115_280 Hb_000567_070--Hb_000115_280 Hb_005000_170--Hb_001226_150 Hb_005000_170--Hb_007894_150 Hb_000329_800 Hb_000329_800 Hb_005000_170--Hb_000329_800 Hb_004846_220 Hb_004846_220 Hb_005000_170--Hb_004846_220 Hb_002592_060 Hb_002592_060 Hb_005000_170--Hb_002592_060 Hb_000441_220 Hb_000441_220 Hb_005000_170--Hb_000441_220 Hb_001776_060 Hb_001776_060 Hb_000144_070--Hb_001776_060 Hb_013394_030 Hb_013394_030 Hb_000144_070--Hb_013394_030 Hb_000144_070--Hb_000339_040 Hb_000789_320 Hb_000789_320 Hb_000144_070--Hb_000789_320 Hb_012384_030 Hb_012384_030 Hb_000144_070--Hb_012384_030 Hb_000352_350 Hb_000352_350 Hb_000144_070--Hb_000352_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8478 10.9339 30.0277 15.0864 14.7404 13.5971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.472 13.8035 17.2605 14.4115 15.511

CAGE analysis