Hb_000676_070

Information

Type -
Description -
Location Contig676: 45012-46737
Sequence    

Annotation

kegg
ID rcu:RCOM_0534160
description hypothetical protein
nr
ID XP_012072886.1
description PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S6A1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0534160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53544: 45194-46224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_070 0.0 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
2 Hb_001025_120 0.069163988 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
3 Hb_000028_520 0.085955944 - - hypothetical protein L484_025125 [Morus notabilis]
4 Hb_000336_210 0.0904887222 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
5 Hb_001824_080 0.0911927109 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
6 Hb_005588_080 0.0914225348 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
7 Hb_000567_070 0.0923738748 - - autophagy protein, putative [Ricinus communis]
8 Hb_000375_390 0.0924761148 - - poly-A binding protein, putative [Ricinus communis]
9 Hb_000304_070 0.0927083253 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
10 Hb_000260_460 0.0928224888 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
11 Hb_000006_010 0.0930828451 - - conserved hypothetical protein [Ricinus communis]
12 Hb_018790_020 0.0930992933 - - protein kinase, putative [Ricinus communis]
13 Hb_000061_180 0.0933379369 - - exonuclease, putative [Ricinus communis]
14 Hb_000230_400 0.0937267077 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000254_100 0.0937533645 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
16 Hb_000003_170 0.0944744025 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
17 Hb_002716_060 0.0946736574 - - carboxylesterase np, putative [Ricinus communis]
18 Hb_027380_060 0.0946994541 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
19 Hb_000363_310 0.096238705 - - DNA topoisomerase type I, putative [Ricinus communis]
20 Hb_002326_040 0.0969928471 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]

Gene co-expression network

sample Hb_000676_070 Hb_000676_070 Hb_001025_120 Hb_001025_120 Hb_000676_070--Hb_001025_120 Hb_000028_520 Hb_000028_520 Hb_000676_070--Hb_000028_520 Hb_000336_210 Hb_000336_210 Hb_000676_070--Hb_000336_210 Hb_001824_080 Hb_001824_080 Hb_000676_070--Hb_001824_080 Hb_005588_080 Hb_005588_080 Hb_000676_070--Hb_005588_080 Hb_000567_070 Hb_000567_070 Hb_000676_070--Hb_000567_070 Hb_018790_020 Hb_018790_020 Hb_001025_120--Hb_018790_020 Hb_002716_060 Hb_002716_060 Hb_001025_120--Hb_002716_060 Hb_007894_150 Hb_007894_150 Hb_001025_120--Hb_007894_150 Hb_004807_020 Hb_004807_020 Hb_001025_120--Hb_004807_020 Hb_001025_120--Hb_000028_520 Hb_002157_120 Hb_002157_120 Hb_000028_520--Hb_002157_120 Hb_000028_520--Hb_018790_020 Hb_000061_180 Hb_000061_180 Hb_000028_520--Hb_000061_180 Hb_000058_130 Hb_000058_130 Hb_000028_520--Hb_000058_130 Hb_003119_060 Hb_003119_060 Hb_000028_520--Hb_003119_060 Hb_000905_110 Hb_000905_110 Hb_000336_210--Hb_000905_110 Hb_000875_080 Hb_000875_080 Hb_000336_210--Hb_000875_080 Hb_014834_150 Hb_014834_150 Hb_000336_210--Hb_014834_150 Hb_002272_050 Hb_002272_050 Hb_000336_210--Hb_002272_050 Hb_171900_090 Hb_171900_090 Hb_000336_210--Hb_171900_090 Hb_000297_160 Hb_000297_160 Hb_000336_210--Hb_000297_160 Hb_004109_120 Hb_004109_120 Hb_001824_080--Hb_004109_120 Hb_000254_100 Hb_000254_100 Hb_001824_080--Hb_000254_100 Hb_004109_260 Hb_004109_260 Hb_001824_080--Hb_004109_260 Hb_000304_070 Hb_000304_070 Hb_001824_080--Hb_000304_070 Hb_004339_040 Hb_004339_040 Hb_001824_080--Hb_004339_040 Hb_007821_020 Hb_007821_020 Hb_001824_080--Hb_007821_020 Hb_000230_400 Hb_000230_400 Hb_005588_080--Hb_000230_400 Hb_000059_380 Hb_000059_380 Hb_005588_080--Hb_000059_380 Hb_003428_010 Hb_003428_010 Hb_005588_080--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_005588_080--Hb_003513_010 Hb_003861_060 Hb_003861_060 Hb_005588_080--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_005588_080--Hb_007007_120 Hb_000567_070--Hb_007821_020 Hb_000390_230 Hb_000390_230 Hb_000567_070--Hb_000390_230 Hb_000567_070--Hb_000254_100 Hb_003186_020 Hb_003186_020 Hb_000567_070--Hb_003186_020 Hb_006483_110 Hb_006483_110 Hb_000567_070--Hb_006483_110 Hb_000115_280 Hb_000115_280 Hb_000567_070--Hb_000115_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.321634 0.312918 0.694837 0.4653 0.534514 0.239482
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.310239 0.44733 0.373858 0.310846 0.581672

CAGE analysis