Hb_004339_040

Information

Type -
Description -
Location Contig4339: 43689-45926
Sequence    

Annotation

kegg
ID pop:POPTR_0162s00290g
description hypothetical protein
nr
ID XP_006388539.1
description hypothetical protein POPTR_0162s00290g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A0A0A9MPR8
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0005737
description 7-methylguanosine phosphate-specific 5 -nucleotidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42404: 29283-46028
cDNA
(Sanger)
(ID:Location)		 049_N16.ab1: 29283-43734

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004339_040 0.0 - - hypothetical protein POPTR_0162s00290g, partial [Populus trichocarpa]
2 Hb_000880_070 0.0740006641 - - gamma-tubulin complex component, putative [Ricinus communis]
3 Hb_001824_080 0.0778625589 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
4 Hb_004109_120 0.0797334128 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
5 Hb_004109_260 0.0830922929 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
6 Hb_001623_500 0.0861044806 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
7 Hb_005946_040 0.0893841654 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
8 Hb_000304_070 0.0895501112 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
9 Hb_008304_020 0.0909982488 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
10 Hb_000254_100 0.0910891107 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
11 Hb_000579_080 0.0945596451 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
12 Hb_010863_050 0.0946584693 - - OTU domain-containing protein 6B, putative [Ricinus communis]
13 Hb_001703_040 0.0951593623 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
14 Hb_012438_030 0.0958438178 - - PREDICTED: protein sym-1 [Jatropha curcas]
15 Hb_004100_050 0.0977020877 - - PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Jatropha curcas]
16 Hb_005162_110 0.0981498492 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
17 Hb_001832_200 0.0988594824 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
18 Hb_006501_050 0.0991987184 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
19 Hb_000826_030 0.0992343951 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
20 Hb_000757_030 0.1028042494 - - radical sam protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004339_040 Hb_004339_040 Hb_000880_070 Hb_000880_070 Hb_004339_040--Hb_000880_070 Hb_001824_080 Hb_001824_080 Hb_004339_040--Hb_001824_080 Hb_004109_120 Hb_004109_120 Hb_004339_040--Hb_004109_120 Hb_004109_260 Hb_004109_260 Hb_004339_040--Hb_004109_260 Hb_001623_500 Hb_001623_500 Hb_004339_040--Hb_001623_500 Hb_005946_040 Hb_005946_040 Hb_004339_040--Hb_005946_040 Hb_000321_140 Hb_000321_140 Hb_000880_070--Hb_000321_140 Hb_004100_050 Hb_004100_050 Hb_000880_070--Hb_004100_050 Hb_002055_020 Hb_002055_020 Hb_000880_070--Hb_002055_020 Hb_000254_100 Hb_000254_100 Hb_000880_070--Hb_000254_100 Hb_000880_070--Hb_001824_080 Hb_001824_080--Hb_004109_120 Hb_001824_080--Hb_000254_100 Hb_001824_080--Hb_004109_260 Hb_000304_070 Hb_000304_070 Hb_001824_080--Hb_000304_070 Hb_007821_020 Hb_007821_020 Hb_001824_080--Hb_007821_020 Hb_000207_300 Hb_000207_300 Hb_004109_120--Hb_000207_300 Hb_004109_120--Hb_000254_100 Hb_000724_020 Hb_000724_020 Hb_004109_120--Hb_000724_020 Hb_001158_160 Hb_001158_160 Hb_004109_120--Hb_001158_160 Hb_000802_130 Hb_000802_130 Hb_004109_260--Hb_000802_130 Hb_000613_120 Hb_000613_120 Hb_004109_260--Hb_000613_120 Hb_001438_010 Hb_001438_010 Hb_004109_260--Hb_001438_010 Hb_004109_260--Hb_000880_070 Hb_001832_200 Hb_001832_200 Hb_001623_500--Hb_001832_200 Hb_007199_020 Hb_007199_020 Hb_001623_500--Hb_007199_020 Hb_187247_020 Hb_187247_020 Hb_001623_500--Hb_187247_020 Hb_017193_010 Hb_017193_010 Hb_001623_500--Hb_017193_010 Hb_000579_080 Hb_000579_080 Hb_001623_500--Hb_000579_080 Hb_000537_100 Hb_000537_100 Hb_005946_040--Hb_000537_100 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_029622_120 Hb_029622_120 Hb_005946_040--Hb_029622_120 Hb_002631_240 Hb_002631_240 Hb_005946_040--Hb_002631_240 Hb_007558_090 Hb_007558_090 Hb_005946_040--Hb_007558_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.86362 3.33364 11.5477 3.79114 4.29669 3.14109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52862 4.15928 3.30398 5.99221 8.13628

CAGE analysis