Hb_029622_120

Information

Type -
Description -
Location Contig29622: 62777-78359
Sequence    

Annotation

kegg
ID rcu:RCOM_1502370
description polycomb protein embryonic flower, putative
nr
ID XP_012090509.1
description PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
swissprot
ID Q8L6Y4
description Polycomb group protein EMBRYONIC FLOWER 2 OS=Arabidopsis thaliana GN=EMF2 PE=1 SV=2
trembl
ID A0A067JI33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26304 PE=4 SV=1
Gene Ontology
ID GO:0003677
description polycomb group protein embryonic flower 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31002: 62868-67340 , PASA_asmbl_31003: 78268-78483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029622_120 0.0 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
2 Hb_000537_100 0.0586205951 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
3 Hb_007558_090 0.0668274472 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_005946_040 0.0711505329 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
5 Hb_000723_030 0.0786179323 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
6 Hb_001900_140 0.0843548444 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
7 Hb_002435_100 0.0855202864 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
8 Hb_049575_010 0.0858885777 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
9 Hb_001703_040 0.0877938817 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
10 Hb_002876_300 0.0941039341 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
11 Hb_000176_020 0.094544065 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
12 Hb_000230_460 0.0945683937 - - Speckle-type POZ protein, putative [Ricinus communis]
13 Hb_004225_060 0.0947674926 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]
14 Hb_073973_090 0.095443165 - - Aminotransferase ybdL, putative [Ricinus communis]
15 Hb_000160_140 0.0958738168 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
16 Hb_146255_020 0.0967491731 - - PREDICTED: chromatin structure-remodeling complex protein BSH [Jatropha curcas]
17 Hb_001025_120 0.0973251645 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
18 Hb_009296_070 0.0981408637 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
19 Hb_000035_090 0.1001199821 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
20 Hb_001587_180 0.1007320111 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]

Gene co-expression network

sample Hb_029622_120 Hb_029622_120 Hb_000537_100 Hb_000537_100 Hb_029622_120--Hb_000537_100 Hb_007558_090 Hb_007558_090 Hb_029622_120--Hb_007558_090 Hb_005946_040 Hb_005946_040 Hb_029622_120--Hb_005946_040 Hb_000723_030 Hb_000723_030 Hb_029622_120--Hb_000723_030 Hb_001900_140 Hb_001900_140 Hb_029622_120--Hb_001900_140 Hb_002435_100 Hb_002435_100 Hb_029622_120--Hb_002435_100 Hb_000537_100--Hb_005946_040 Hb_073973_090 Hb_073973_090 Hb_000537_100--Hb_073973_090 Hb_002631_240 Hb_002631_240 Hb_000537_100--Hb_002631_240 Hb_002316_140 Hb_002316_140 Hb_000537_100--Hb_002316_140 Hb_001178_010 Hb_001178_010 Hb_000537_100--Hb_001178_010 Hb_007558_090--Hb_001900_140 Hb_007558_090--Hb_005946_040 Hb_007558_090--Hb_000537_100 Hb_049575_010 Hb_049575_010 Hb_007558_090--Hb_049575_010 Hb_000926_080 Hb_000926_080 Hb_007558_090--Hb_000926_080 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_005946_040--Hb_002631_240 Hb_004225_060 Hb_004225_060 Hb_000723_030--Hb_004225_060 Hb_000160_140 Hb_000160_140 Hb_000723_030--Hb_000160_140 Hb_002203_030 Hb_002203_030 Hb_000723_030--Hb_002203_030 Hb_001500_120 Hb_001500_120 Hb_000723_030--Hb_001500_120 Hb_003687_120 Hb_003687_120 Hb_000723_030--Hb_003687_120 Hb_001587_180 Hb_001587_180 Hb_001900_140--Hb_001587_180 Hb_006132_090 Hb_006132_090 Hb_001900_140--Hb_006132_090 Hb_003266_030 Hb_003266_030 Hb_001900_140--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_001900_140--Hb_007904_230 Hb_001900_140--Hb_005946_040 Hb_007254_020 Hb_007254_020 Hb_002435_100--Hb_007254_020 Hb_000292_100 Hb_000292_100 Hb_002435_100--Hb_000292_100 Hb_000230_460 Hb_000230_460 Hb_002435_100--Hb_000230_460 Hb_000035_090 Hb_000035_090 Hb_002435_100--Hb_000035_090 Hb_000230_400 Hb_000230_400 Hb_002435_100--Hb_000230_400 Hb_000282_090 Hb_000282_090 Hb_002435_100--Hb_000282_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.60939 7.2714 14.9583 5.79181 3.49941 3.19304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.35102 8.6107 5.20463 5.40532 10.0142

CAGE analysis