Hb_001900_140

Information

Type -
Description -
Location Contig1900: 245338-254951
Sequence    

Annotation

kegg
ID rcu:RCOM_0866360
description ATP-dependent Clp protease proteolytic subunit, putative (EC:3.4.21.92)
nr
ID XP_012070506.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
swissprot
ID Q94B60
description ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1
trembl
ID A0A067L6R4
description ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_02774 PE=3 SV=1
Gene Ontology
ID GO:0009535
description atp-dependent clp protease proteolytic subunit chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18952: 245365-254685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001900_140 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
2 Hb_001587_180 0.0644125213 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
3 Hb_006132_090 0.0717889344 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
4 Hb_007558_090 0.0731980245 - - PREDICTED: serine/threonine-protein kinase STN8, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_003266_030 0.0752782589 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
6 Hb_007904_230 0.0766759241 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
7 Hb_005946_040 0.0808004159 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
8 Hb_007002_020 0.0811798705 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
9 Hb_073973_090 0.0821107276 - - Aminotransferase ybdL, putative [Ricinus communis]
10 Hb_000926_080 0.0822490968 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
11 Hb_004965_110 0.0823061315 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
12 Hb_000122_190 0.083306147 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
13 Hb_000003_780 0.0840396069 - - hexokinase [Manihot esculenta]
14 Hb_000537_100 0.0841884552 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
15 Hb_029622_120 0.0843548444 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
16 Hb_001287_040 0.0850372579 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
17 Hb_002759_190 0.0858740326 - - PREDICTED: protein NLRC3 [Jatropha curcas]
18 Hb_000811_070 0.0858964391 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
19 Hb_011671_260 0.0861524873 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
20 Hb_002631_240 0.0864046012 - - JHL17M24.3 [Jatropha curcas]

Gene co-expression network

sample Hb_001900_140 Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_001900_140--Hb_001587_180 Hb_006132_090 Hb_006132_090 Hb_001900_140--Hb_006132_090 Hb_007558_090 Hb_007558_090 Hb_001900_140--Hb_007558_090 Hb_003266_030 Hb_003266_030 Hb_001900_140--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_001900_140--Hb_007904_230 Hb_005946_040 Hb_005946_040 Hb_001900_140--Hb_005946_040 Hb_001287_040 Hb_001287_040 Hb_001587_180--Hb_001287_040 Hb_000003_780 Hb_000003_780 Hb_001587_180--Hb_000003_780 Hb_001587_180--Hb_005946_040 Hb_001935_100 Hb_001935_100 Hb_001587_180--Hb_001935_100 Hb_001541_110 Hb_001541_110 Hb_001587_180--Hb_001541_110 Hb_005167_010 Hb_005167_010 Hb_006132_090--Hb_005167_010 Hb_003878_090 Hb_003878_090 Hb_006132_090--Hb_003878_090 Hb_002157_120 Hb_002157_120 Hb_006132_090--Hb_002157_120 Hb_007002_020 Hb_007002_020 Hb_006132_090--Hb_007002_020 Hb_003119_060 Hb_003119_060 Hb_006132_090--Hb_003119_060 Hb_029622_120 Hb_029622_120 Hb_007558_090--Hb_029622_120 Hb_007558_090--Hb_005946_040 Hb_000537_100 Hb_000537_100 Hb_007558_090--Hb_000537_100 Hb_049575_010 Hb_049575_010 Hb_007558_090--Hb_049575_010 Hb_000926_080 Hb_000926_080 Hb_007558_090--Hb_000926_080 Hb_003266_030--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_003266_030--Hb_011671_260 Hb_004965_110 Hb_004965_110 Hb_003266_030--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_003266_030--Hb_000926_080 Hb_000364_050 Hb_000364_050 Hb_007904_230--Hb_000364_050 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007192_030 Hb_007192_030 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_007904_230--Hb_049575_010 Hb_005946_040--Hb_000537_100 Hb_005162_110 Hb_005162_110 Hb_005946_040--Hb_005162_110 Hb_002876_300 Hb_002876_300 Hb_005946_040--Hb_002876_300 Hb_005946_040--Hb_029622_120 Hb_002631_240 Hb_002631_240 Hb_005946_040--Hb_002631_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9216 15.4478 44.848 22.9914 8.68609 11.7432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9848 27.1847 21.2088 15.7245 37.7907

CAGE analysis