Hb_003266_030

Information

Type -
Description -
Location Contig3266: 29632-30774
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05550g
description POPTRDRAFT_551192; hypothetical protein
nr
ID XP_002302120.1
description hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
swissprot
ID Q9XIN8
description F-box protein At2g27310 OS=Arabidopsis thaliana GN=At2g27310 PE=2 SV=1
trembl
ID B9GSQ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s05550g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34347: 29511-32098
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003266_030 0.0 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
2 Hb_007904_230 0.0589284386 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
3 Hb_011671_260 0.0601472589 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
4 Hb_004965_110 0.0606587754 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
5 Hb_000086_080 0.0720479947 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003411_090 0.0730467991 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
7 Hb_000926_080 0.0748541747 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
8 Hb_000080_130 0.0751325989 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
9 Hb_001900_140 0.0752782589 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
10 Hb_004452_120 0.0761720607 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
11 Hb_000167_110 0.076771705 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
12 Hb_000364_050 0.0768845599 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_000907_180 0.0787312454 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
14 Hb_000200_300 0.0795578988 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
15 Hb_000684_030 0.0801196972 - - syntaxin, putative [Ricinus communis]
16 Hb_073973_090 0.0813337615 - - Aminotransferase ybdL, putative [Ricinus communis]
17 Hb_002687_120 0.0836049243 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
18 Hb_000317_260 0.0838440038 - - unknown [Populus trichocarpa]
19 Hb_006132_090 0.0838834543 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
20 Hb_007192_030 0.0849673633 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_003266_030 Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_003266_030--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_003266_030--Hb_011671_260 Hb_004965_110 Hb_004965_110 Hb_003266_030--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_003266_030--Hb_000086_080 Hb_003411_090 Hb_003411_090 Hb_003266_030--Hb_003411_090 Hb_000926_080 Hb_000926_080 Hb_003266_030--Hb_000926_080 Hb_000364_050 Hb_000364_050 Hb_007904_230--Hb_000364_050 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007192_030 Hb_007192_030 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_049575_010 Hb_049575_010 Hb_007904_230--Hb_049575_010 Hb_002631_240 Hb_002631_240 Hb_011671_260--Hb_002631_240 Hb_073973_090 Hb_073973_090 Hb_011671_260--Hb_073973_090 Hb_000167_110 Hb_000167_110 Hb_011671_260--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_011671_260--Hb_006907_060 Hb_011671_260--Hb_004965_110 Hb_004965_110--Hb_007904_230 Hb_006132_090 Hb_006132_090 Hb_004965_110--Hb_006132_090 Hb_004965_110--Hb_000926_080 Hb_001900_140 Hb_001900_140 Hb_004965_110--Hb_001900_140 Hb_000086_080--Hb_007192_030 Hb_000086_080--Hb_073973_090 Hb_000086_080--Hb_011671_260 Hb_000023_360 Hb_000023_360 Hb_000086_080--Hb_000023_360 Hb_003053_110 Hb_003053_110 Hb_000086_080--Hb_003053_110 Hb_000317_260 Hb_000317_260 Hb_003411_090--Hb_000317_260 Hb_003411_090--Hb_000167_110 Hb_004951_060 Hb_004951_060 Hb_003411_090--Hb_004951_060 Hb_003411_090--Hb_011671_260 Hb_004452_120 Hb_004452_120 Hb_003411_090--Hb_004452_120 Hb_000200_300 Hb_000200_300 Hb_000926_080--Hb_000200_300 Hb_000926_080--Hb_000086_080 Hb_000926_080--Hb_006907_060 Hb_027506_040 Hb_027506_040 Hb_000926_080--Hb_027506_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24126 1.37232 4.95044 3.7422 1.05499 1.62332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53789 2.84215 2.38566 2.14354 4.25946

CAGE analysis