Hb_006907_060

Information

Type -
Description -
Location Contig6907: 39539-43627
Sequence    

Annotation

kegg
ID rcu:RCOM_0903090
description Alternative oxidase 4, chloroplast precursor, putative
nr
ID XP_002518411.1
description Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q56X52
description Ubiquinol oxidase 4, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=AOX4 PE=1 SV=2
trembl
ID B9RXE2
description Ubiquinol oxidase OS=Ricinus communis GN=RCOM_0903090 PE=3 SV=1
Gene Ontology
ID GO:0016021
description ubiquinol oxidase chloroplastic chromoplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54322: 39621-43581
cDNA
(Sanger)
(ID:Location)		 012_N08.ab1: 40566-43497

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006907_060 0.0 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
2 Hb_002631_240 0.0617916639 - - JHL17M24.3 [Jatropha curcas]
3 Hb_000941_100 0.0671682466 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
4 Hb_003053_110 0.068611617 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
5 Hb_073973_090 0.071183768 - - Aminotransferase ybdL, putative [Ricinus communis]
6 Hb_008705_020 0.0727684732 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
7 Hb_001195_770 0.0727837818 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
8 Hb_007741_110 0.0732889865 - - -
9 Hb_011671_260 0.0762113162 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
10 Hb_000926_080 0.0793266723 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
11 Hb_001438_010 0.0803970865 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
12 Hb_001882_010 0.0839554452 - - -
13 Hb_005946_040 0.084289607 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
14 Hb_000086_080 0.0867654663 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000167_110 0.0869039494 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
16 Hb_001277_100 0.08829897 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
17 Hb_049575_010 0.0889918282 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
18 Hb_156850_100 0.0893501695 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
19 Hb_001832_200 0.0897328229 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_005539_010 0.0898953562 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]

Gene co-expression network

sample Hb_006907_060 Hb_006907_060 Hb_002631_240 Hb_002631_240 Hb_006907_060--Hb_002631_240 Hb_000941_100 Hb_000941_100 Hb_006907_060--Hb_000941_100 Hb_003053_110 Hb_003053_110 Hb_006907_060--Hb_003053_110 Hb_073973_090 Hb_073973_090 Hb_006907_060--Hb_073973_090 Hb_008705_020 Hb_008705_020 Hb_006907_060--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_006907_060--Hb_001195_770 Hb_011671_260 Hb_011671_260 Hb_002631_240--Hb_011671_260 Hb_002631_240--Hb_073973_090 Hb_001703_040 Hb_001703_040 Hb_002631_240--Hb_001703_040 Hb_000537_100 Hb_000537_100 Hb_002631_240--Hb_000537_100 Hb_005946_040 Hb_005946_040 Hb_002631_240--Hb_005946_040 Hb_000941_100--Hb_003053_110 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_000941_100--Hb_001195_770 Hb_012150_030 Hb_012150_030 Hb_000941_100--Hb_012150_030 Hb_005539_010 Hb_005539_010 Hb_000941_100--Hb_005539_010 Hb_003053_110--Hb_012150_030 Hb_003053_110--Hb_008705_020 Hb_003053_110--Hb_001195_770 Hb_007741_110 Hb_007741_110 Hb_003053_110--Hb_007741_110 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_000035_090 Hb_000035_090 Hb_073973_090--Hb_000035_090 Hb_000023_360 Hb_000023_360 Hb_073973_090--Hb_000023_360 Hb_073973_090--Hb_011671_260 Hb_049575_010 Hb_049575_010 Hb_073973_090--Hb_049575_010 Hb_073973_090--Hb_000537_100 Hb_008705_020--Hb_001195_770 Hb_030736_040 Hb_030736_040 Hb_008705_020--Hb_030736_040 Hb_000167_110 Hb_000167_110 Hb_008705_020--Hb_000167_110 Hb_008705_020--Hb_000941_100 Hb_000816_200 Hb_000816_200 Hb_001195_770--Hb_000816_200 Hb_002762_110 Hb_002762_110 Hb_001195_770--Hb_002762_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44381 6.51187 20.0924 12.2766 6.29974 4.83548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.35948 9.73187 6.75702 6.90687 21.9184

CAGE analysis