Hb_002762_110

Information

Type -
Description -
Location Contig2762: 112867-120286
Sequence    

Annotation

kegg
ID rcu:RCOM_1509960
description hypothetical protein
nr
ID XP_002511368.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAZ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1509960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28902: 113116-117904 , PASA_asmbl_28904: 120942-125933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002762_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004644_030 0.0548459788 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
3 Hb_000622_290 0.0581437363 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
4 Hb_000107_430 0.0605525325 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
5 Hb_003053_110 0.0682842589 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
6 Hb_000077_150 0.0699228177 - - PREDICTED: riboflavin synthase [Jatropha curcas]
7 Hb_001214_050 0.0706848253 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
8 Hb_001195_770 0.0753184986 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
9 Hb_001195_450 0.0757539127 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
10 Hb_008705_020 0.0814802973 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
11 Hb_000023_360 0.0817201681 - - phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic [Jatropha curcas]
12 Hb_001723_060 0.0822832178 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
13 Hb_007192_030 0.0835633016 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
14 Hb_001946_380 0.0835967797 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
15 Hb_000358_020 0.0849254212 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
16 Hb_171718_010 0.0850107769 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
17 Hb_000086_080 0.0887151687 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000167_110 0.0889961672 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_005218_080 0.0896912519 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000364_050 0.0900408341 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002762_110 Hb_002762_110 Hb_004644_030 Hb_004644_030 Hb_002762_110--Hb_004644_030 Hb_000622_290 Hb_000622_290 Hb_002762_110--Hb_000622_290 Hb_000107_430 Hb_000107_430 Hb_002762_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_002762_110--Hb_003053_110 Hb_000077_150 Hb_000077_150 Hb_002762_110--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_002762_110--Hb_001214_050 Hb_004644_030--Hb_000077_150 Hb_004644_030--Hb_000622_290 Hb_008147_080 Hb_008147_080 Hb_004644_030--Hb_008147_080 Hb_004644_030--Hb_003053_110 Hb_001578_020 Hb_001578_020 Hb_004644_030--Hb_001578_020 Hb_007192_030 Hb_007192_030 Hb_000622_290--Hb_007192_030 Hb_001946_380 Hb_001946_380 Hb_000622_290--Hb_001946_380 Hb_000622_290--Hb_000107_430 Hb_001369_790 Hb_001369_790 Hb_000622_290--Hb_001369_790 Hb_000107_430--Hb_003053_110 Hb_007741_110 Hb_007741_110 Hb_000107_430--Hb_007741_110 Hb_000107_430--Hb_007192_030 Hb_000167_110 Hb_000167_110 Hb_000107_430--Hb_000167_110 Hb_000107_430--Hb_004644_030 Hb_012150_030 Hb_012150_030 Hb_003053_110--Hb_012150_030 Hb_000941_100 Hb_000941_100 Hb_003053_110--Hb_000941_100 Hb_008705_020 Hb_008705_020 Hb_003053_110--Hb_008705_020 Hb_001195_770 Hb_001195_770 Hb_003053_110--Hb_001195_770 Hb_003053_110--Hb_007741_110 Hb_134849_010 Hb_134849_010 Hb_003053_110--Hb_134849_010 Hb_000077_150--Hb_001214_050 Hb_003106_190 Hb_003106_190 Hb_000077_150--Hb_003106_190 Hb_002078_340 Hb_002078_340 Hb_000077_150--Hb_002078_340 Hb_002811_010 Hb_002811_010 Hb_000077_150--Hb_002811_010 Hb_009778_060 Hb_009778_060 Hb_001214_050--Hb_009778_060 Hb_001723_060 Hb_001723_060 Hb_001214_050--Hb_001723_060 Hb_000032_500 Hb_000032_500 Hb_001214_050--Hb_000032_500 Hb_001214_050--Hb_001195_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.43742 3.40891 6.49746 6.9072 1.87381 2.2731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.87966 5.77332 4.58446 4.76741 12.5404

CAGE analysis