Hb_001946_380

Information

Type transcription factor
Description TF Family: C3H
Location Contig1946: 308904-312552
Sequence    

Annotation

kegg
ID rcu:RCOM_0221100
description nucleic acid binding protein, putative
nr
ID XP_012078749.1
description PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
swissprot
ID Q6AT25
description Zinc finger CCCH domain-containing protein 34 OS=Oryza sativa subsp. japonica GN=Os05g0176400 PE=2 SV=1
trembl
ID A0A067K8E7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13302 PE=4 SV=1
Gene Ontology
ID GO:0046872
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19434: 310003-310228 , PASA_asmbl_19437: 313411-326370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_380 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
2 Hb_121089_040 0.0783671597 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
3 Hb_000622_290 0.0835136553 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
4 Hb_002762_110 0.0835967797 - - conserved hypothetical protein [Ricinus communis]
5 Hb_171718_010 0.085012314 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
6 Hb_000107_430 0.0868334388 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
7 Hb_003875_030 0.0869145393 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
8 Hb_004644_030 0.0997429681 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
9 Hb_011606_020 0.1022261726 - - hypothetical protein CISIN_1g023687mg [Citrus sinensis]
10 Hb_001195_770 0.1024380259 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
11 Hb_001138_060 0.1046232396 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
12 Hb_003453_050 0.1049661361 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
13 Hb_001663_040 0.1085869227 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
14 Hb_000116_130 0.1106695624 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
15 Hb_055690_010 0.1107068201 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
16 Hb_007441_310 0.1116379235 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
17 Hb_001277_100 0.1119065833 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
18 Hb_005218_080 0.1137791946 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000983_070 0.1150251745 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007192_030 0.1162248457 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]

Gene co-expression network

sample Hb_001946_380 Hb_001946_380 Hb_121089_040 Hb_121089_040 Hb_001946_380--Hb_121089_040 Hb_000622_290 Hb_000622_290 Hb_001946_380--Hb_000622_290 Hb_002762_110 Hb_002762_110 Hb_001946_380--Hb_002762_110 Hb_171718_010 Hb_171718_010 Hb_001946_380--Hb_171718_010 Hb_000107_430 Hb_000107_430 Hb_001946_380--Hb_000107_430 Hb_003875_030 Hb_003875_030 Hb_001946_380--Hb_003875_030 Hb_001976_030 Hb_001976_030 Hb_121089_040--Hb_001976_030 Hb_001628_120 Hb_001628_120 Hb_121089_040--Hb_001628_120 Hb_000816_200 Hb_000816_200 Hb_121089_040--Hb_000816_200 Hb_001195_770 Hb_001195_770 Hb_121089_040--Hb_001195_770 Hb_121089_040--Hb_003875_030 Hb_000622_290--Hb_002762_110 Hb_007192_030 Hb_007192_030 Hb_000622_290--Hb_007192_030 Hb_004644_030 Hb_004644_030 Hb_000622_290--Hb_004644_030 Hb_000622_290--Hb_000107_430 Hb_001369_790 Hb_001369_790 Hb_000622_290--Hb_001369_790 Hb_002762_110--Hb_004644_030 Hb_002762_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_002762_110--Hb_003053_110 Hb_000077_150 Hb_000077_150 Hb_002762_110--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_002762_110--Hb_001214_050 Hb_000035_350 Hb_000035_350 Hb_171718_010--Hb_000035_350 Hb_000358_020 Hb_000358_020 Hb_171718_010--Hb_000358_020 Hb_171718_010--Hb_002762_110 Hb_171718_010--Hb_003875_030 Hb_005218_080 Hb_005218_080 Hb_171718_010--Hb_005218_080 Hb_000107_430--Hb_003053_110 Hb_007741_110 Hb_007741_110 Hb_000107_430--Hb_007741_110 Hb_000107_430--Hb_007192_030 Hb_000167_110 Hb_000167_110 Hb_000107_430--Hb_000167_110 Hb_000107_430--Hb_004644_030 Hb_001663_040 Hb_001663_040 Hb_003875_030--Hb_001663_040 Hb_000585_110 Hb_000585_110 Hb_003875_030--Hb_000585_110 Hb_055690_010 Hb_055690_010 Hb_003875_030--Hb_055690_010 Hb_008375_010 Hb_008375_010 Hb_003875_030--Hb_008375_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37804 1.66678 4.68637 5.76493 1.19583 1.26953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76384 3.45023 4.19472 2.77035 9.42916

CAGE analysis