Hb_171718_010

Information

Type -
Description -
Location Contig171718: 52-1536
Sequence    

Annotation

kegg
ID egr:104417890
description disease resistance protein At4g27190-like
nr
ID XP_010027394.1
description PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059B936
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00167 PE=4 SV=1
Gene Ontology
ID GO:0032550
description disease resistance protein at4g27190-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171718_010 0.0 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
2 Hb_000035_350 0.0622988932 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
3 Hb_000358_020 0.0811151005 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
4 Hb_002762_110 0.0850107769 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001946_380 0.085012314 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
6 Hb_003875_030 0.0855272203 - - PREDICTED: probable plastidic glucose transporter 1 [Jatropha curcas]
7 Hb_005218_080 0.0872531956 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_055690_010 0.091766344 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
9 Hb_000622_290 0.0975166261 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
10 Hb_000638_130 0.0979676534 - - PREDICTED: SAL1 phosphatase-like [Jatropha curcas]
11 Hb_000599_210 0.0980814598 - - serine/threonine-protein kinase, putative [Ricinus communis]
12 Hb_001080_300 0.0982610368 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
13 Hb_000909_080 0.0996387374 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
14 Hb_000365_010 0.1017164652 - - hypothetical protein POPTR_0006s10920g [Populus trichocarpa]
15 Hb_003913_130 0.1017336005 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
16 Hb_000107_430 0.1035172147 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
17 Hb_000088_260 0.1047423622 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
18 Hb_004644_030 0.1061735847 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
19 Hb_030736_040 0.1077259851 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
20 Hb_022092_030 0.1096081783 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_171718_010 Hb_171718_010 Hb_000035_350 Hb_000035_350 Hb_171718_010--Hb_000035_350 Hb_000358_020 Hb_000358_020 Hb_171718_010--Hb_000358_020 Hb_002762_110 Hb_002762_110 Hb_171718_010--Hb_002762_110 Hb_001946_380 Hb_001946_380 Hb_171718_010--Hb_001946_380 Hb_003875_030 Hb_003875_030 Hb_171718_010--Hb_003875_030 Hb_005218_080 Hb_005218_080 Hb_171718_010--Hb_005218_080 Hb_000035_350--Hb_000358_020 Hb_000088_260 Hb_000088_260 Hb_000035_350--Hb_000088_260 Hb_000638_130 Hb_000638_130 Hb_000035_350--Hb_000638_130 Hb_000035_350--Hb_005218_080 Hb_030736_040 Hb_030736_040 Hb_000035_350--Hb_030736_040 Hb_000909_080 Hb_000909_080 Hb_000358_020--Hb_000909_080 Hb_055690_010 Hb_055690_010 Hb_000358_020--Hb_055690_010 Hb_003440_020 Hb_003440_020 Hb_000358_020--Hb_003440_020 Hb_000358_020--Hb_005218_080 Hb_000358_020--Hb_030736_040 Hb_004644_030 Hb_004644_030 Hb_002762_110--Hb_004644_030 Hb_000622_290 Hb_000622_290 Hb_002762_110--Hb_000622_290 Hb_000107_430 Hb_000107_430 Hb_002762_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_002762_110--Hb_003053_110 Hb_000077_150 Hb_000077_150 Hb_002762_110--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_002762_110--Hb_001214_050 Hb_121089_040 Hb_121089_040 Hb_001946_380--Hb_121089_040 Hb_001946_380--Hb_000622_290 Hb_001946_380--Hb_002762_110 Hb_001946_380--Hb_000107_430 Hb_001946_380--Hb_003875_030 Hb_001663_040 Hb_001663_040 Hb_003875_030--Hb_001663_040 Hb_000585_110 Hb_000585_110 Hb_003875_030--Hb_000585_110 Hb_003875_030--Hb_055690_010 Hb_008375_010 Hb_008375_010 Hb_003875_030--Hb_008375_010 Hb_005218_080--Hb_003440_020 Hb_005218_080--Hb_000909_080 Hb_008147_080 Hb_008147_080 Hb_005218_080--Hb_008147_080 Hb_005218_080--Hb_002762_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.221 26.5617 42.14 52.7242 8.65786 19.6317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8789 32.5405 39.2435 33.8087 76.5208

CAGE analysis