Hb_000622_290

Information

Type -
Description -
Location Contig622: 243018-244235
Sequence    

Annotation

kegg
ID rcu:RCOM_1617250
description Protein UNUSUAL FLORAL ORGANS, putative
nr
ID XP_012083278.1
description PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
swissprot
ID Q9M310
description F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1
trembl
ID A0A067JXC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14308 PE=4 SV=1
Gene Ontology
ID GO:0019005
description f-box kelch-repeat protein at3g61590

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51583: 242966-244273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_290 0.0 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
2 Hb_002762_110 0.0581437363 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007192_030 0.0710673809 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
4 Hb_004644_030 0.0714811152 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
5 Hb_001946_380 0.0835136553 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Jatropha curcas]
6 Hb_000107_430 0.0838513522 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
7 Hb_001369_790 0.0840802294 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
8 Hb_000077_150 0.0882896427 - - PREDICTED: riboflavin synthase [Jatropha curcas]
9 Hb_000086_080 0.096953031 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003453_050 0.0969646445 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
11 Hb_008695_200 0.0973087842 - - Protein grpE, putative [Ricinus communis]
12 Hb_171718_010 0.0975166261 - - PREDICTED: disease resistance protein At4g27190-like [Eucalyptus grandis]
13 Hb_001898_180 0.0981138537 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
14 Hb_001711_120 0.0988676571 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
15 Hb_005218_080 0.0991215754 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001195_450 0.1000881237 - - PREDICTED: uncharacterized protein LOC105633771 [Jatropha curcas]
17 Hb_001138_060 0.1028464756 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
18 Hb_001789_200 0.1034821394 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
19 Hb_002053_010 0.1039329704 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
20 Hb_000599_210 0.1039794204 - - serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000622_290 Hb_000622_290 Hb_002762_110 Hb_002762_110 Hb_000622_290--Hb_002762_110 Hb_007192_030 Hb_007192_030 Hb_000622_290--Hb_007192_030 Hb_004644_030 Hb_004644_030 Hb_000622_290--Hb_004644_030 Hb_001946_380 Hb_001946_380 Hb_000622_290--Hb_001946_380 Hb_000107_430 Hb_000107_430 Hb_000622_290--Hb_000107_430 Hb_001369_790 Hb_001369_790 Hb_000622_290--Hb_001369_790 Hb_002762_110--Hb_004644_030 Hb_002762_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_002762_110--Hb_003053_110 Hb_000077_150 Hb_000077_150 Hb_002762_110--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_002762_110--Hb_001214_050 Hb_007192_030--Hb_001369_790 Hb_000086_080 Hb_000086_080 Hb_007192_030--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_007192_030--Hb_000394_180 Hb_007904_230 Hb_007904_230 Hb_007192_030--Hb_007904_230 Hb_004951_060 Hb_004951_060 Hb_007192_030--Hb_004951_060 Hb_004644_030--Hb_000077_150 Hb_008147_080 Hb_008147_080 Hb_004644_030--Hb_008147_080 Hb_004644_030--Hb_003053_110 Hb_001578_020 Hb_001578_020 Hb_004644_030--Hb_001578_020 Hb_121089_040 Hb_121089_040 Hb_001946_380--Hb_121089_040 Hb_001946_380--Hb_002762_110 Hb_171718_010 Hb_171718_010 Hb_001946_380--Hb_171718_010 Hb_001946_380--Hb_000107_430 Hb_003875_030 Hb_003875_030 Hb_001946_380--Hb_003875_030 Hb_000107_430--Hb_003053_110 Hb_007741_110 Hb_007741_110 Hb_000107_430--Hb_007741_110 Hb_000107_430--Hb_007192_030 Hb_000167_110 Hb_000167_110 Hb_000107_430--Hb_000167_110 Hb_000107_430--Hb_004644_030 Hb_004440_060 Hb_004440_060 Hb_001369_790--Hb_004440_060 Hb_000392_550 Hb_000392_550 Hb_001369_790--Hb_000392_550 Hb_001369_790--Hb_000086_080 Hb_001369_790--Hb_000394_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.76467 4.23108 9.22624 12.6372 1.99363 3.92682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.29711 11.0983 7.9377 6.56649 20.3899

CAGE analysis