Hb_004440_060

Information

Type -
Description -
Location Contig4440: 84384-87571
Sequence    

Annotation

kegg
ID rcu:RCOM_0535930
description aldose 1-epimerase, putative
nr
ID XP_002521566.1
description aldose 1-epimerase, putative [Ricinus communis]
swissprot
ID Q40784
description Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1
trembl
ID B9S6E7
description Aldose 1-epimerase, putative OS=Ricinus communis GN=RCOM_0535930 PE=4 SV=1
Gene Ontology
ID GO:0009570
description glucose-6-phosphate 1-epimerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42767: 80168-84024 , PASA_asmbl_42768: 84489-87550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004440_060 0.0 - - aldose 1-epimerase, putative [Ricinus communis]
2 Hb_000317_260 0.0605159274 - - unknown [Populus trichocarpa]
3 Hb_001578_020 0.0736252963 - - Protein virR, putative [Ricinus communis]
4 Hb_001369_790 0.0792593293 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
5 Hb_007534_050 0.0802218555 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_002053_010 0.0859803825 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
7 Hb_004644_030 0.0868663521 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
8 Hb_003266_030 0.0893927166 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
9 Hb_005127_030 0.0893989547 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_007904_230 0.09137089 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
11 Hb_000086_080 0.0918707222 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000364_050 0.0934256176 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
13 Hb_003053_110 0.0934603075 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
14 Hb_003747_230 0.0961253977 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
15 Hb_055619_010 0.0964655031 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
16 Hb_003411_090 0.0969324604 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
17 Hb_001946_160 0.0979748174 - - putative chaperon P13.9 [Castanea sativa]
18 Hb_007192_030 0.0982483219 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
19 Hb_008695_200 0.0990950693 - - Protein grpE, putative [Ricinus communis]
20 Hb_004951_060 0.0992413851 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]

Gene co-expression network

sample Hb_004440_060 Hb_004440_060 Hb_000317_260 Hb_000317_260 Hb_004440_060--Hb_000317_260 Hb_001578_020 Hb_001578_020 Hb_004440_060--Hb_001578_020 Hb_001369_790 Hb_001369_790 Hb_004440_060--Hb_001369_790 Hb_007534_050 Hb_007534_050 Hb_004440_060--Hb_007534_050 Hb_002053_010 Hb_002053_010 Hb_004440_060--Hb_002053_010 Hb_004644_030 Hb_004644_030 Hb_004440_060--Hb_004644_030 Hb_003411_090 Hb_003411_090 Hb_000317_260--Hb_003411_090 Hb_004951_060 Hb_004951_060 Hb_000317_260--Hb_004951_060 Hb_007904_230 Hb_007904_230 Hb_000317_260--Hb_007904_230 Hb_003266_030 Hb_003266_030 Hb_000317_260--Hb_003266_030 Hb_000317_260--Hb_001369_790 Hb_001578_020--Hb_004644_030 Hb_055619_010 Hb_055619_010 Hb_001578_020--Hb_055619_010 Hb_001578_020--Hb_007534_050 Hb_008147_080 Hb_008147_080 Hb_001578_020--Hb_008147_080 Hb_002811_010 Hb_002811_010 Hb_001578_020--Hb_002811_010 Hb_007192_030 Hb_007192_030 Hb_001369_790--Hb_007192_030 Hb_000392_550 Hb_000392_550 Hb_001369_790--Hb_000392_550 Hb_000086_080 Hb_000086_080 Hb_001369_790--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_001369_790--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290 Hb_007534_050--Hb_055619_010 Hb_005127_030 Hb_005127_030 Hb_007534_050--Hb_005127_030 Hb_007534_050--Hb_002811_010 Hb_007534_050--Hb_000317_260 Hb_001789_200 Hb_001789_200 Hb_002053_010--Hb_001789_200 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_016219_030 Hb_016219_030 Hb_002053_010--Hb_016219_030 Hb_002053_010--Hb_001369_790 Hb_002053_010--Hb_000086_080 Hb_002762_110 Hb_002762_110 Hb_004644_030--Hb_002762_110 Hb_000077_150 Hb_000077_150 Hb_004644_030--Hb_000077_150 Hb_004644_030--Hb_000622_290 Hb_004644_030--Hb_008147_080 Hb_003053_110 Hb_003053_110 Hb_004644_030--Hb_003053_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.26947 4.3847 18.8998 12.3111 4.40762 6.57342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5115 14.5911 6.7885 10.2347 23.723

CAGE analysis