Hb_005127_030

Information

Type -
Description -
Location Contig5127: 42778-50166
Sequence    

Annotation

kegg
ID rcu:RCOM_0801580
description tryptophanyl-tRNA synthetase, putative (EC:6.1.1.2)
nr
ID XP_012077394.1
description PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q8DHG3
description Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=trpS PE=3 SV=1
trembl
ID A0A067KDH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07743 PE=3 SV=1
Gene Ontology
ID GO:0005739
description tryptophan--trna mitochondrial isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46380: 46087-46440 , PASA_asmbl_46381: 43155-49795 , PASA_asmbl_46382: 46761-48250
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005127_030 0.0 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_006538_120 0.0746773962 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
3 Hb_000221_140 0.0849038582 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
4 Hb_007534_050 0.0863632205 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_005731_160 0.0871429257 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_012150_030 0.0878790185 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_000212_440 0.0885569469 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_004440_060 0.0893989547 - - aldose 1-epimerase, putative [Ricinus communis]
9 Hb_001946_160 0.0894932041 - - putative chaperon P13.9 [Castanea sativa]
10 Hb_000941_100 0.0895509111 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
11 Hb_000237_200 0.0931399879 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
12 Hb_003053_110 0.0945271829 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
13 Hb_009775_010 0.094669156 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
14 Hb_000907_180 0.0953809192 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
15 Hb_005539_010 0.0968237224 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
16 Hb_001578_020 0.0980399581 - - Protein virR, putative [Ricinus communis]
17 Hb_025194_060 0.0995861997 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_001109_050 0.1002769687 - - PREDICTED: ankyrin-1 [Jatropha curcas]
19 Hb_004452_120 0.1003299056 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
20 Hb_000608_380 0.1007102804 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005127_030 Hb_005127_030 Hb_006538_120 Hb_006538_120 Hb_005127_030--Hb_006538_120 Hb_000221_140 Hb_000221_140 Hb_005127_030--Hb_000221_140 Hb_007534_050 Hb_007534_050 Hb_005127_030--Hb_007534_050 Hb_005731_160 Hb_005731_160 Hb_005127_030--Hb_005731_160 Hb_012150_030 Hb_012150_030 Hb_005127_030--Hb_012150_030 Hb_000212_440 Hb_000212_440 Hb_005127_030--Hb_000212_440 Hb_006538_120--Hb_000221_140 Hb_009775_010 Hb_009775_010 Hb_006538_120--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_006538_120--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_006538_120--Hb_001410_070 Hb_000941_100 Hb_000941_100 Hb_006538_120--Hb_000941_100 Hb_001660_120 Hb_001660_120 Hb_000221_140--Hb_001660_120 Hb_000221_140--Hb_009775_010 Hb_000221_140--Hb_000212_440 Hb_003038_200 Hb_003038_200 Hb_000221_140--Hb_003038_200 Hb_005405_020 Hb_005405_020 Hb_000221_140--Hb_005405_020 Hb_004440_060 Hb_004440_060 Hb_007534_050--Hb_004440_060 Hb_055619_010 Hb_055619_010 Hb_007534_050--Hb_055619_010 Hb_001578_020 Hb_001578_020 Hb_007534_050--Hb_001578_020 Hb_002811_010 Hb_002811_010 Hb_007534_050--Hb_002811_010 Hb_000317_260 Hb_000317_260 Hb_007534_050--Hb_000317_260 Hb_005731_160--Hb_002811_010 Hb_000613_110 Hb_000613_110 Hb_005731_160--Hb_000613_110 Hb_002758_010 Hb_002758_010 Hb_005731_160--Hb_002758_010 Hb_000130_320 Hb_000130_320 Hb_005731_160--Hb_000130_320 Hb_005731_160--Hb_055619_010 Hb_000648_040 Hb_000648_040 Hb_005731_160--Hb_000648_040 Hb_003053_110 Hb_003053_110 Hb_012150_030--Hb_003053_110 Hb_004452_120 Hb_004452_120 Hb_012150_030--Hb_004452_120 Hb_010863_050 Hb_010863_050 Hb_012150_030--Hb_010863_050 Hb_134849_010 Hb_134849_010 Hb_012150_030--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_012150_030--Hb_048093_010 Hb_012150_030--Hb_000941_100 Hb_003376_230 Hb_003376_230 Hb_000212_440--Hb_003376_230 Hb_035273_020 Hb_035273_020 Hb_000212_440--Hb_035273_020 Hb_000212_440--Hb_005405_020 Hb_000061_180 Hb_000061_180 Hb_000212_440--Hb_000061_180 Hb_000212_440--Hb_005539_010 Hb_000212_440--Hb_004452_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.81914 1.61802 7.69733 4.17688 2.32544 4.43452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00746 4.69632 2.53557 4.01708 9.95435

CAGE analysis