Hb_000648_040

Information

Type -
Description -
Location Contig648: 71474-77914
Sequence    

Annotation

kegg
ID gmx:100775304
description mitochondrial substrate carrier family protein Q-like
nr
ID ABK94972.1
description unknown [Populus trichocarpa]
swissprot
ID O04200
description Peroxisomal nicotinamide adenine dinucleotide carrier OS=Arabidopsis thaliana GN=PXN PE=1 SV=1
trembl
ID A9PF19
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0016021
description peroxisomal nicotinamide adenine dinucleotide carrier-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52419: 71474-77961
cDNA
(Sanger)
(ID:Location)		 011_P20.ab1: 71474-74275 , 018_H21.ab1: 71474-74413 , 031_A15.ab1: 71474-73476

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000648_040 0.0 - - unknown [Populus trichocarpa]
2 Hb_000130_320 0.0631250469 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
3 Hb_005731_160 0.0839370293 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_001080_070 0.0955140922 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
5 Hb_002758_010 0.0968314117 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
6 Hb_000613_110 0.0972459266 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
7 Hb_003475_020 0.1007384983 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
8 Hb_033312_010 0.1046795233 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_158560_010 0.1056368608 - - PREDICTED: LOW QUALITY PROTEIN: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
10 Hb_000032_500 0.1067842243 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
11 Hb_003106_190 0.1075154088 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
12 Hb_013405_080 0.1076943527 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
13 Hb_002282_070 0.108961788 - - PREDICTED: protein DJ-1 homolog C isoform X2 [Jatropha curcas]
14 Hb_001790_080 0.1095973179 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
15 Hb_000200_010 0.1099915228 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
16 Hb_134849_010 0.1102288299 - - ATP synthase subunit d, putative [Ricinus communis]
17 Hb_001936_090 0.1131847522 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
18 Hb_000345_370 0.1139884592 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
19 Hb_002811_010 0.1144871139 - - cysteine synthase, putative [Ricinus communis]
20 Hb_001449_070 0.1145053069 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000648_040 Hb_000648_040 Hb_000130_320 Hb_000130_320 Hb_000648_040--Hb_000130_320 Hb_005731_160 Hb_005731_160 Hb_000648_040--Hb_005731_160 Hb_001080_070 Hb_001080_070 Hb_000648_040--Hb_001080_070 Hb_002758_010 Hb_002758_010 Hb_000648_040--Hb_002758_010 Hb_000613_110 Hb_000613_110 Hb_000648_040--Hb_000613_110 Hb_003475_020 Hb_003475_020 Hb_000648_040--Hb_003475_020 Hb_000130_320--Hb_002758_010 Hb_001790_080 Hb_001790_080 Hb_000130_320--Hb_001790_080 Hb_032920_050 Hb_032920_050 Hb_000130_320--Hb_032920_050 Hb_000749_090 Hb_000749_090 Hb_000130_320--Hb_000749_090 Hb_001936_090 Hb_001936_090 Hb_000130_320--Hb_001936_090 Hb_002811_010 Hb_002811_010 Hb_005731_160--Hb_002811_010 Hb_005731_160--Hb_000613_110 Hb_005731_160--Hb_002758_010 Hb_005731_160--Hb_000130_320 Hb_055619_010 Hb_055619_010 Hb_005731_160--Hb_055619_010 Hb_000189_450 Hb_000189_450 Hb_001080_070--Hb_000189_450 Hb_003142_010 Hb_003142_010 Hb_001080_070--Hb_003142_010 Hb_000345_370 Hb_000345_370 Hb_001080_070--Hb_000345_370 Hb_016461_030 Hb_016461_030 Hb_001080_070--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_001080_070--Hb_001677_220 Hb_002205_230 Hb_002205_230 Hb_002758_010--Hb_002205_230 Hb_002758_010--Hb_001936_090 Hb_005253_030 Hb_005253_030 Hb_002758_010--Hb_005253_030 Hb_001589_010 Hb_001589_010 Hb_002758_010--Hb_001589_010 Hb_000613_110--Hb_002811_010 Hb_000613_110--Hb_032920_050 Hb_001449_070 Hb_001449_070 Hb_000613_110--Hb_001449_070 Hb_003106_190 Hb_003106_190 Hb_000613_110--Hb_003106_190 Hb_003994_110 Hb_003994_110 Hb_000613_110--Hb_003994_110 Hb_003475_020--Hb_003994_110 Hb_003475_020--Hb_001790_080 Hb_000676_200 Hb_000676_200 Hb_003475_020--Hb_000676_200 Hb_003475_020--Hb_000130_320 Hb_002232_390 Hb_002232_390 Hb_003475_020--Hb_002232_390 Hb_002282_070 Hb_002282_070 Hb_003475_020--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.44531 6.62861 7.96228 8.00668 5.32922 8.33135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.40708 8.87442 3.0093 8.18756 26.3868

CAGE analysis