Hb_003142_010

Information

Type transcription factor
Description TF Family: SET
Location Contig3142: 1952-6060
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02120g
description POPTRDRAFT_421736; hypothetical protein
nr
ID XP_011006347.1
description PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
swissprot
ID Q8GZ42
description Histone-lysine N-methyltransferase ATX5 OS=Arabidopsis thaliana GN=ATX5 PE=2 SV=1
trembl
ID B9I5A8
description Histone-lysine N-methyltransferase OS=Populus trichocarpa GN=POPTR_0012s02120g PE=4 SV=2
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase atx4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33197: 1286-2066 , PASA_asmbl_33199: 4489-6018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003142_010 0.0 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
2 Hb_001677_220 0.0556616955 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
3 Hb_000189_450 0.0822954023 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
4 Hb_001080_070 0.0880644577 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
5 Hb_000200_010 0.093147752 - - PREDICTED: MATE efflux family protein 8-like [Jatropha curcas]
6 Hb_001009_260 0.0951950026 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
7 Hb_000617_250 0.0965829312 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
8 Hb_000032_500 0.100737998 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
9 Hb_016760_010 0.1025246143 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_002150_020 0.1026558049 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000816_200 0.1027826257 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
12 Hb_023988_030 0.1034828089 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
13 Hb_000629_070 0.1035302788 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
14 Hb_005571_010 0.1076345484 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
15 Hb_016461_030 0.1078682157 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_006916_050 0.1088480605 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_004735_020 0.1114332969 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
18 Hb_003124_120 0.111568878 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
19 Hb_011364_020 0.1118970545 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
20 Hb_000008_350 0.1132991823 - - -

Gene co-expression network

sample Hb_003142_010 Hb_003142_010 Hb_001677_220 Hb_001677_220 Hb_003142_010--Hb_001677_220 Hb_000189_450 Hb_000189_450 Hb_003142_010--Hb_000189_450 Hb_001080_070 Hb_001080_070 Hb_003142_010--Hb_001080_070 Hb_000200_010 Hb_000200_010 Hb_003142_010--Hb_000200_010 Hb_001009_260 Hb_001009_260 Hb_003142_010--Hb_001009_260 Hb_000617_250 Hb_000617_250 Hb_003142_010--Hb_000617_250 Hb_000032_500 Hb_000032_500 Hb_001677_220--Hb_000032_500 Hb_001677_220--Hb_000189_450 Hb_000008_350 Hb_000008_350 Hb_001677_220--Hb_000008_350 Hb_003124_120 Hb_003124_120 Hb_001677_220--Hb_003124_120 Hb_000816_200 Hb_000816_200 Hb_001677_220--Hb_000816_200 Hb_000189_450--Hb_000816_200 Hb_016219_030 Hb_016219_030 Hb_000189_450--Hb_016219_030 Hb_000189_450--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000189_450--Hb_000114_150 Hb_000345_370 Hb_000345_370 Hb_001080_070--Hb_000345_370 Hb_000648_040 Hb_000648_040 Hb_001080_070--Hb_000648_040 Hb_016461_030 Hb_016461_030 Hb_001080_070--Hb_016461_030 Hb_001080_070--Hb_001677_220 Hb_000200_010--Hb_000032_500 Hb_134849_010 Hb_134849_010 Hb_000200_010--Hb_134849_010 Hb_000200_010--Hb_001677_220 Hb_001105_040 Hb_001105_040 Hb_000200_010--Hb_001105_040 Hb_012506_070 Hb_012506_070 Hb_000200_010--Hb_012506_070 Hb_130589_010 Hb_130589_010 Hb_001009_260--Hb_130589_010 Hb_000120_860 Hb_000120_860 Hb_001009_260--Hb_000120_860 Hb_002150_020 Hb_002150_020 Hb_001009_260--Hb_002150_020 Hb_005571_010 Hb_005571_010 Hb_001009_260--Hb_005571_010 Hb_004735_020 Hb_004735_020 Hb_001009_260--Hb_004735_020 Hb_000579_040 Hb_000579_040 Hb_001009_260--Hb_000579_040 Hb_007012_030 Hb_007012_030 Hb_000617_250--Hb_007012_030 Hb_025194_050 Hb_025194_050 Hb_000617_250--Hb_025194_050 Hb_001421_090 Hb_001421_090 Hb_000617_250--Hb_001421_090 Hb_000376_210 Hb_000376_210 Hb_000617_250--Hb_000376_210 Hb_000482_050 Hb_000482_050 Hb_000617_250--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_000617_250--Hb_068804_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.452 2.12338 3.78469 3.95628 1.4143 1.66525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95244 1.80424 0.733118 2.98751 10.4595

CAGE analysis