Hb_001421_090

Information

Type -
Description -
Location Contig1421: 136956-138161
Sequence    

Annotation

kegg
ID rcu:RCOM_1278080
description hypothetical protein
nr
ID XP_002527644.1
description hypothetical protein RCOM_1278080 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNS5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1278080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11259: 135657-137142
cDNA
(Sanger)
(ID:Location)		 012_D22.ab1: 137711-138381

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001421_090 0.0 - - hypothetical protein RCOM_1278080 [Ricinus communis]
2 Hb_000617_250 0.0809841934 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
3 Hb_024184_010 0.0895973568 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
4 Hb_001439_070 0.091087991 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000300_510 0.0960492782 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
6 Hb_000538_280 0.0961922121 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
7 Hb_005914_040 0.0967637945 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
8 Hb_009178_060 0.0972908191 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_003125_220 0.0980546978 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
10 Hb_007012_030 0.0982138065 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]
11 Hb_003682_070 0.0996684972 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
12 Hb_025194_050 0.1002616238 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
13 Hb_002973_110 0.1017535531 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000922_060 0.1022892111 - - kinesin light chain, putative [Ricinus communis]
15 Hb_001998_150 0.1028192104 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
16 Hb_003417_040 0.1029176424 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
17 Hb_001627_040 0.1029325417 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
18 Hb_000376_210 0.1030922898 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
19 Hb_003462_060 0.1043073106 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
20 Hb_004957_030 0.1050221825 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]

Gene co-expression network

sample Hb_001421_090 Hb_001421_090 Hb_000617_250 Hb_000617_250 Hb_001421_090--Hb_000617_250 Hb_024184_010 Hb_024184_010 Hb_001421_090--Hb_024184_010 Hb_001439_070 Hb_001439_070 Hb_001421_090--Hb_001439_070 Hb_000300_510 Hb_000300_510 Hb_001421_090--Hb_000300_510 Hb_000538_280 Hb_000538_280 Hb_001421_090--Hb_000538_280 Hb_005914_040 Hb_005914_040 Hb_001421_090--Hb_005914_040 Hb_007012_030 Hb_007012_030 Hb_000617_250--Hb_007012_030 Hb_025194_050 Hb_025194_050 Hb_000617_250--Hb_025194_050 Hb_000376_210 Hb_000376_210 Hb_000617_250--Hb_000376_210 Hb_000482_050 Hb_000482_050 Hb_000617_250--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_000617_250--Hb_068804_090 Hb_001876_040 Hb_001876_040 Hb_024184_010--Hb_001876_040 Hb_001157_230 Hb_001157_230 Hb_024184_010--Hb_001157_230 Hb_003125_220 Hb_003125_220 Hb_024184_010--Hb_003125_220 Hb_000212_120 Hb_000212_120 Hb_024184_010--Hb_000212_120 Hb_002883_030 Hb_002883_030 Hb_024184_010--Hb_002883_030 Hb_007545_010 Hb_007545_010 Hb_024184_010--Hb_007545_010 Hb_001998_210 Hb_001998_210 Hb_001439_070--Hb_001998_210 Hb_001439_070--Hb_000617_250 Hb_003661_010 Hb_003661_010 Hb_001439_070--Hb_003661_010 Hb_001059_060 Hb_001059_060 Hb_001439_070--Hb_001059_060 Hb_004052_110 Hb_004052_110 Hb_001439_070--Hb_004052_110 Hb_000000_310 Hb_000000_310 Hb_000300_510--Hb_000000_310 Hb_005192_010 Hb_005192_010 Hb_000300_510--Hb_005192_010 Hb_000922_060 Hb_000922_060 Hb_000300_510--Hb_000922_060 Hb_003682_070 Hb_003682_070 Hb_000300_510--Hb_003682_070 Hb_000684_390 Hb_000684_390 Hb_000300_510--Hb_000684_390 Hb_003040_050 Hb_003040_050 Hb_000538_280--Hb_003040_050 Hb_000193_330 Hb_000193_330 Hb_000538_280--Hb_000193_330 Hb_009288_020 Hb_009288_020 Hb_000538_280--Hb_009288_020 Hb_001005_130 Hb_001005_130 Hb_000538_280--Hb_001005_130 Hb_000059_230 Hb_000059_230 Hb_000538_280--Hb_000059_230 Hb_005701_130 Hb_005701_130 Hb_000538_280--Hb_005701_130 Hb_005571_010 Hb_005571_010 Hb_005914_040--Hb_005571_010 Hb_006846_080 Hb_006846_080 Hb_005914_040--Hb_006846_080 Hb_023988_030 Hb_023988_030 Hb_005914_040--Hb_023988_030 Hb_009178_060 Hb_009178_060 Hb_005914_040--Hb_009178_060 Hb_005250_010 Hb_005250_010 Hb_005914_040--Hb_005250_010 Hb_000862_100 Hb_000862_100 Hb_005914_040--Hb_000862_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.143 37.9267 35.258 45.6159 16.808 23.2559
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5761 13.5143 12.3372 22.4405 78.4781

CAGE analysis