Hb_006846_080

Information

Type -
Description -
Location Contig6846: 63728-67056
Sequence    

Annotation

kegg
ID rcu:RCOM_1503060
description calnexin, putative
nr
ID XP_002511066.1
description calnexin, putative [Ricinus communis]
swissprot
ID P29402
description Calnexin homolog 1 OS=Arabidopsis thaliana GN=CNX1 PE=1 SV=1
trembl
ID B9RA41
description Calnexin, putative OS=Ricinus communis GN=RCOM_1503060 PE=3 SV=1
Gene Ontology
ID GO:0005739
description calnexin homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54065: 63834-67024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006846_080 0.0 - - calnexin, putative [Ricinus communis]
2 Hb_005914_040 0.0754932148 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
3 Hb_000025_500 0.0946652801 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_002399_020 0.0948525902 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
5 Hb_010757_030 0.1005265471 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_003632_030 0.1043814138 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
7 Hb_004225_040 0.1060774481 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
8 Hb_005250_010 0.1064840359 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
9 Hb_016760_010 0.1090151662 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_005571_010 0.1105647956 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
11 Hb_001579_200 0.1111231895 - - nucleoredoxin, putative [Ricinus communis]
12 Hb_001411_030 0.1115338861 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
13 Hb_001411_050 0.1137941126 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
14 Hb_006916_030 0.11401864 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
15 Hb_009178_060 0.1162950158 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000120_860 0.1169974358 - - nucellin, putative [Ricinus communis]
17 Hb_000359_220 0.117404446 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
18 Hb_001341_010 0.1177931801 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
19 Hb_002973_110 0.1198947721 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_000186_080 0.1199976708 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]

Gene co-expression network

sample Hb_006846_080 Hb_006846_080 Hb_005914_040 Hb_005914_040 Hb_006846_080--Hb_005914_040 Hb_000025_500 Hb_000025_500 Hb_006846_080--Hb_000025_500 Hb_002399_020 Hb_002399_020 Hb_006846_080--Hb_002399_020 Hb_010757_030 Hb_010757_030 Hb_006846_080--Hb_010757_030 Hb_003632_030 Hb_003632_030 Hb_006846_080--Hb_003632_030 Hb_004225_040 Hb_004225_040 Hb_006846_080--Hb_004225_040 Hb_005571_010 Hb_005571_010 Hb_005914_040--Hb_005571_010 Hb_023988_030 Hb_023988_030 Hb_005914_040--Hb_023988_030 Hb_009178_060 Hb_009178_060 Hb_005914_040--Hb_009178_060 Hb_005250_010 Hb_005250_010 Hb_005914_040--Hb_005250_010 Hb_000862_100 Hb_000862_100 Hb_005914_040--Hb_000862_100 Hb_000167_120 Hb_000167_120 Hb_000025_500--Hb_000167_120 Hb_001221_300 Hb_001221_300 Hb_000025_500--Hb_001221_300 Hb_052946_010 Hb_052946_010 Hb_000025_500--Hb_052946_010 Hb_001998_150 Hb_001998_150 Hb_000025_500--Hb_001998_150 Hb_001341_010 Hb_001341_010 Hb_000025_500--Hb_001341_010 Hb_004041_030 Hb_004041_030 Hb_000025_500--Hb_004041_030 Hb_000762_110 Hb_000762_110 Hb_002399_020--Hb_000762_110 Hb_021409_190 Hb_021409_190 Hb_002399_020--Hb_021409_190 Hb_016760_010 Hb_016760_010 Hb_002399_020--Hb_016760_010 Hb_002399_020--Hb_010757_030 Hb_000120_860 Hb_000120_860 Hb_002399_020--Hb_000120_860 Hb_000069_490 Hb_000069_490 Hb_010757_030--Hb_000069_490 Hb_003878_080 Hb_003878_080 Hb_010757_030--Hb_003878_080 Hb_028707_110 Hb_028707_110 Hb_010757_030--Hb_028707_110 Hb_003029_140 Hb_003029_140 Hb_010757_030--Hb_003029_140 Hb_010757_030--Hb_016760_010 Hb_022250_100 Hb_022250_100 Hb_003632_030--Hb_022250_100 Hb_119600_050 Hb_119600_050 Hb_003632_030--Hb_119600_050 Hb_003632_030--Hb_005250_010 Hb_001411_030 Hb_001411_030 Hb_003632_030--Hb_001411_030 Hb_000562_050 Hb_000562_050 Hb_003632_030--Hb_000562_050 Hb_000771_170 Hb_000771_170 Hb_004225_040--Hb_000771_170 Hb_001472_160 Hb_001472_160 Hb_004225_040--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_004225_040--Hb_004884_180 Hb_000224_220 Hb_000224_220 Hb_004225_040--Hb_000224_220 Hb_001140_180 Hb_001140_180 Hb_004225_040--Hb_001140_180 Hb_002828_060 Hb_002828_060 Hb_004225_040--Hb_002828_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.3141 160.4 139.941 198.505 138.722 104.253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.8848 41.0993 72.3166 139.482 454.05

CAGE analysis