Hb_001411_030

Information

Type -
Description -
Location Contig1411: 67472-68566
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09620g
description hypothetical protein
nr
ID XP_006385682.1
description hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GMR1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09620g PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC105640956

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11124: 67477-67734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001411_030 0.0 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
2 Hb_004225_040 0.1030405923 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
3 Hb_119600_050 0.1053889815 - - sugar transporter, putative [Ricinus communis]
4 Hb_022250_100 0.1061240907 - - calnexin, putative [Ricinus communis]
5 Hb_005211_020 0.1065132391 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
6 Hb_003470_070 0.107536649 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
7 Hb_001579_200 0.1110628007 - - nucleoredoxin, putative [Ricinus communis]
8 Hb_005701_090 0.1111671999 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_006846_080 0.1115338861 - - calnexin, putative [Ricinus communis]
10 Hb_003632_030 0.1133632651 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
11 Hb_001789_020 0.1157079405 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
12 Hb_005914_040 0.1160127883 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
13 Hb_004306_030 0.1166247046 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
14 Hb_001140_180 0.1169012485 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
15 Hb_004294_020 0.1181648542 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
16 Hb_000359_220 0.1182119185 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
17 Hb_000826_070 0.1183720622 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005181_040 0.1208353172 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
19 Hb_002973_110 0.1230527062 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_001411_050 0.1239114323 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]

Gene co-expression network

sample Hb_001411_030 Hb_001411_030 Hb_004225_040 Hb_004225_040 Hb_001411_030--Hb_004225_040 Hb_119600_050 Hb_119600_050 Hb_001411_030--Hb_119600_050 Hb_022250_100 Hb_022250_100 Hb_001411_030--Hb_022250_100 Hb_005211_020 Hb_005211_020 Hb_001411_030--Hb_005211_020 Hb_003470_070 Hb_003470_070 Hb_001411_030--Hb_003470_070 Hb_001579_200 Hb_001579_200 Hb_001411_030--Hb_001579_200 Hb_000771_170 Hb_000771_170 Hb_004225_040--Hb_000771_170 Hb_001472_160 Hb_001472_160 Hb_004225_040--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_004225_040--Hb_004884_180 Hb_000224_220 Hb_000224_220 Hb_004225_040--Hb_000224_220 Hb_001140_180 Hb_001140_180 Hb_004225_040--Hb_001140_180 Hb_002828_060 Hb_002828_060 Hb_004225_040--Hb_002828_060 Hb_003632_030 Hb_003632_030 Hb_119600_050--Hb_003632_030 Hb_007123_050 Hb_007123_050 Hb_119600_050--Hb_007123_050 Hb_000284_230 Hb_000284_230 Hb_119600_050--Hb_000284_230 Hb_000608_300 Hb_000608_300 Hb_119600_050--Hb_000608_300 Hb_006355_020 Hb_006355_020 Hb_119600_050--Hb_006355_020 Hb_022250_100--Hb_006355_020 Hb_000041_300 Hb_000041_300 Hb_022250_100--Hb_000041_300 Hb_000684_350 Hb_000684_350 Hb_022250_100--Hb_000684_350 Hb_000958_070 Hb_000958_070 Hb_022250_100--Hb_000958_070 Hb_005250_010 Hb_005250_010 Hb_022250_100--Hb_005250_010 Hb_000562_050 Hb_000562_050 Hb_022250_100--Hb_000562_050 Hb_002600_060 Hb_002600_060 Hb_005211_020--Hb_002600_060 Hb_000826_070 Hb_000826_070 Hb_005211_020--Hb_000826_070 Hb_002973_110 Hb_002973_110 Hb_005211_020--Hb_002973_110 Hb_005211_020--Hb_000608_300 Hb_013459_020 Hb_013459_020 Hb_005211_020--Hb_013459_020 Hb_000925_090 Hb_000925_090 Hb_005211_020--Hb_000925_090 Hb_001427_210 Hb_001427_210 Hb_003470_070--Hb_001427_210 Hb_000562_070 Hb_000562_070 Hb_003470_070--Hb_000562_070 Hb_005181_040 Hb_005181_040 Hb_003470_070--Hb_005181_040 Hb_001040_070 Hb_001040_070 Hb_003470_070--Hb_001040_070 Hb_001277_340 Hb_001277_340 Hb_003470_070--Hb_001277_340 Hb_001411_050 Hb_001411_050 Hb_001579_200--Hb_001411_050 Hb_006916_050 Hb_006916_050 Hb_001579_200--Hb_006916_050 Hb_005571_010 Hb_005571_010 Hb_001579_200--Hb_005571_010 Hb_005914_040 Hb_005914_040 Hb_001579_200--Hb_005914_040 Hb_006846_080 Hb_006846_080 Hb_001579_200--Hb_006846_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.12875 11.0813 11.4287 11.2639 11.816 7.62427
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19352 3.10269 1.94298 11.1723 22.1445

CAGE analysis