Hb_001579_200

Information

Type -
Description -
Location Contig1579: 130624-133684
Sequence    

Annotation

kegg
ID rcu:RCOM_0528060
description nucleoredoxin, putative
nr
ID XP_002525369.1
description nucleoredoxin, putative [Ricinus communis]
swissprot
ID O80763
description Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1
trembl
ID B9SHA0
description Nucleoredoxin, putative OS=Ricinus communis GN=RCOM_0528060 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable nucleoredoxin 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13829: 130484-133681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_200 0.0 - - nucleoredoxin, putative [Ricinus communis]
2 Hb_001411_050 0.0923230254 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
3 Hb_006916_050 0.1011401877 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
4 Hb_005571_010 0.1019929716 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
5 Hb_005914_040 0.1072877426 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
6 Hb_001411_030 0.1110628007 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
7 Hb_006846_080 0.1111231895 - - calnexin, putative [Ricinus communis]
8 Hb_000617_250 0.1125599278 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
9 Hb_004225_040 0.1138503593 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
10 Hb_001998_220 0.1156792817 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
11 Hb_000984_140 0.1179347417 - - PREDICTED: xylulose kinase [Jatropha curcas]
12 Hb_023988_030 0.1190144667 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
13 Hb_003490_050 0.1193639241 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
14 Hb_002399_020 0.1212197064 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
15 Hb_000510_190 0.1218647598 - - glutathione reductase [Hevea brasiliensis]
16 Hb_000025_500 0.12289533 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_006916_030 0.1230501028 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
18 Hb_002828_060 0.1237786699 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
19 Hb_003549_050 0.1253461928 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]
20 Hb_052946_010 0.1258648422 - - PREDICTED: uncharacterized protein LOC105639103 [Jatropha curcas]

Gene co-expression network

sample Hb_001579_200 Hb_001579_200 Hb_001411_050 Hb_001411_050 Hb_001579_200--Hb_001411_050 Hb_006916_050 Hb_006916_050 Hb_001579_200--Hb_006916_050 Hb_005571_010 Hb_005571_010 Hb_001579_200--Hb_005571_010 Hb_005914_040 Hb_005914_040 Hb_001579_200--Hb_005914_040 Hb_001411_030 Hb_001411_030 Hb_001579_200--Hb_001411_030 Hb_006846_080 Hb_006846_080 Hb_001579_200--Hb_006846_080 Hb_000359_220 Hb_000359_220 Hb_001411_050--Hb_000359_220 Hb_006916_030 Hb_006916_030 Hb_001411_050--Hb_006916_030 Hb_001411_050--Hb_006846_080 Hb_004225_040 Hb_004225_040 Hb_001411_050--Hb_004225_040 Hb_001140_180 Hb_001140_180 Hb_001411_050--Hb_001140_180 Hb_002249_080 Hb_002249_080 Hb_006916_050--Hb_002249_080 Hb_068079_010 Hb_068079_010 Hb_006916_050--Hb_068079_010 Hb_000376_210 Hb_000376_210 Hb_006916_050--Hb_000376_210 Hb_000617_250 Hb_000617_250 Hb_006916_050--Hb_000617_250 Hb_002828_060 Hb_002828_060 Hb_006916_050--Hb_002828_060 Hb_004705_160 Hb_004705_160 Hb_006916_050--Hb_004705_160 Hb_023988_030 Hb_023988_030 Hb_005571_010--Hb_023988_030 Hb_002150_020 Hb_002150_020 Hb_005571_010--Hb_002150_020 Hb_106890_010 Hb_106890_010 Hb_005571_010--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_005571_010--Hb_003355_010 Hb_005571_010--Hb_005914_040 Hb_055690_010 Hb_055690_010 Hb_005571_010--Hb_055690_010 Hb_005914_040--Hb_006846_080 Hb_005914_040--Hb_023988_030 Hb_009178_060 Hb_009178_060 Hb_005914_040--Hb_009178_060 Hb_005250_010 Hb_005250_010 Hb_005914_040--Hb_005250_010 Hb_000862_100 Hb_000862_100 Hb_005914_040--Hb_000862_100 Hb_001411_030--Hb_004225_040 Hb_119600_050 Hb_119600_050 Hb_001411_030--Hb_119600_050 Hb_022250_100 Hb_022250_100 Hb_001411_030--Hb_022250_100 Hb_005211_020 Hb_005211_020 Hb_001411_030--Hb_005211_020 Hb_003470_070 Hb_003470_070 Hb_001411_030--Hb_003470_070 Hb_000025_500 Hb_000025_500 Hb_006846_080--Hb_000025_500 Hb_002399_020 Hb_002399_020 Hb_006846_080--Hb_002399_020 Hb_010757_030 Hb_010757_030 Hb_006846_080--Hb_010757_030 Hb_003632_030 Hb_003632_030 Hb_006846_080--Hb_003632_030 Hb_006846_080--Hb_004225_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54124 15.9471 16.7572 20.67 13.4078 5.1137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.47592 5.96062 3.20038 18.9171 41.1108

CAGE analysis