Hb_006916_030

Information

Type -
Description -
Location Contig6916: 21890-34237
Sequence    

Annotation

kegg
ID rcu:RCOM_0790280
description hypothetical protein
nr
ID XP_012088076.1
description PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25600 PE=4 SV=1
Gene Ontology
ID GO:0005876
description PREDICTED: uncharacterized protein LOC105646760

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54405: 21975-34215
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006916_030 0.0 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
2 Hb_001109_160 0.0787900924 - - DNA binding protein, putative [Ricinus communis]
3 Hb_000964_170 0.0926268715 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
4 Hb_001140_180 0.0989092303 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
5 Hb_000445_370 0.1013642166 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
6 Hb_008616_040 0.10222164 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
7 Hb_029552_020 0.1027888355 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000762_110 0.1032780541 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
9 Hb_002320_090 0.104485026 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
10 Hb_010984_010 0.1062648862 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000906_070 0.1070887513 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
12 Hb_001250_020 0.1075321775 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
13 Hb_001411_050 0.1080323054 - - PREDICTED: uncharacterized protein LOC105640956 [Jatropha curcas]
14 Hb_000414_080 0.1080615418 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
15 Hb_000066_040 0.1100671552 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
16 Hb_000120_860 0.1110237092 - - nucellin, putative [Ricinus communis]
17 Hb_002828_060 0.1121093121 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
18 Hb_000107_250 0.1135209171 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
19 Hb_006846_080 0.11401864 - - calnexin, putative [Ricinus communis]
20 Hb_001009_260 0.1166177821 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006916_030 Hb_006916_030 Hb_001109_160 Hb_001109_160 Hb_006916_030--Hb_001109_160 Hb_000964_170 Hb_000964_170 Hb_006916_030--Hb_000964_170 Hb_001140_180 Hb_001140_180 Hb_006916_030--Hb_001140_180 Hb_000445_370 Hb_000445_370 Hb_006916_030--Hb_000445_370 Hb_008616_040 Hb_008616_040 Hb_006916_030--Hb_008616_040 Hb_029552_020 Hb_029552_020 Hb_006916_030--Hb_029552_020 Hb_001109_160--Hb_008616_040 Hb_001250_020 Hb_001250_020 Hb_001109_160--Hb_001250_020 Hb_000066_040 Hb_000066_040 Hb_001109_160--Hb_000066_040 Hb_003029_140 Hb_003029_140 Hb_001109_160--Hb_003029_140 Hb_000906_070 Hb_000906_070 Hb_001109_160--Hb_000906_070 Hb_002320_090 Hb_002320_090 Hb_000964_170--Hb_002320_090 Hb_000964_170--Hb_000445_370 Hb_001411_050 Hb_001411_050 Hb_000964_170--Hb_001411_050 Hb_000964_170--Hb_001140_180 Hb_000270_710 Hb_000270_710 Hb_000964_170--Hb_000270_710 Hb_001140_180--Hb_029552_020 Hb_002828_060 Hb_002828_060 Hb_001140_180--Hb_002828_060 Hb_001279_020 Hb_001279_020 Hb_001140_180--Hb_001279_020 Hb_000562_070 Hb_000562_070 Hb_001140_180--Hb_000562_070 Hb_001053_080 Hb_001053_080 Hb_001140_180--Hb_001053_080 Hb_001411_130 Hb_001411_130 Hb_001140_180--Hb_001411_130 Hb_003582_090 Hb_003582_090 Hb_000445_370--Hb_003582_090 Hb_035834_010 Hb_035834_010 Hb_000445_370--Hb_035834_010 Hb_000445_370--Hb_000066_040 Hb_000167_040 Hb_000167_040 Hb_000445_370--Hb_000167_040 Hb_009193_010 Hb_009193_010 Hb_000445_370--Hb_009193_010 Hb_018043_020 Hb_018043_020 Hb_008616_040--Hb_018043_020 Hb_008616_040--Hb_001250_020 Hb_008616_040--Hb_003029_140 Hb_000976_130 Hb_000976_130 Hb_008616_040--Hb_000976_130 Hb_021409_190 Hb_021409_190 Hb_008616_040--Hb_021409_190 Hb_010984_010 Hb_010984_010 Hb_008616_040--Hb_010984_010 Hb_029552_020--Hb_001279_020 Hb_005305_130 Hb_005305_130 Hb_029552_020--Hb_005305_130 Hb_000529_130 Hb_000529_130 Hb_029552_020--Hb_000529_130 Hb_002809_160 Hb_002809_160 Hb_029552_020--Hb_002809_160 Hb_029552_020--Hb_000562_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09155 5.03901 7.7415 8.74301 3.00581 2.87455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05564 1.01412 1.38392 4.39322 15.6673

CAGE analysis