Hb_000167_040

Information

Type -
Description -
Location Contig167: 24645-29651
Sequence    

Annotation

kegg
ID rcu:RCOM_0721950
description Serine carboxypeptidase, putative (EC:3.4.16.5)
nr
ID XP_012080969.1
description PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
swissprot
ID P37891
description Serine carboxypeptidase 3 OS=Oryza sativa subsp. japonica GN=CBP3 PE=2 SV=1
trembl
ID A0A067K2X3
description Carboxypeptidase OS=Jatropha curcas GN=JCGZ_16161 PE=3 SV=1
Gene Ontology
ID GO:0005773
description serine carboxypeptidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15395: 25105-29630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_040 0.0 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
2 Hb_011310_050 0.0664393098 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
3 Hb_001195_310 0.0679852091 - - ATP binding protein, putative [Ricinus communis]
4 Hb_001969_140 0.0769452486 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
5 Hb_000997_070 0.0873486142 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
6 Hb_000679_040 0.0887600274 - - Cellulose synthase 1 [Theobroma cacao]
7 Hb_010381_020 0.0960812522 - - Endosomal P24A protein precursor, putative [Ricinus communis]
8 Hb_000959_300 0.1010940381 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
9 Hb_000254_070 0.1062285984 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
10 Hb_000445_370 0.1084318242 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
11 Hb_007317_020 0.1129470341 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
12 Hb_000244_260 0.120749168 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
13 Hb_000638_060 0.1208252916 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
14 Hb_000418_020 0.1210506139 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
15 Hb_001216_110 0.1214307678 - - PREDICTED: protein GPR107-like [Jatropha curcas]
16 Hb_035834_010 0.1221417849 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000984_140 0.123257878 - - PREDICTED: xylulose kinase [Jatropha curcas]
18 Hb_000012_400 0.1236879668 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
19 Hb_000562_100 0.1238316433 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
20 Hb_000120_740 0.1240434461 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000167_040 Hb_000167_040 Hb_011310_050 Hb_011310_050 Hb_000167_040--Hb_011310_050 Hb_001195_310 Hb_001195_310 Hb_000167_040--Hb_001195_310 Hb_001969_140 Hb_001969_140 Hb_000167_040--Hb_001969_140 Hb_000997_070 Hb_000997_070 Hb_000167_040--Hb_000997_070 Hb_000679_040 Hb_000679_040 Hb_000167_040--Hb_000679_040 Hb_010381_020 Hb_010381_020 Hb_000167_040--Hb_010381_020 Hb_011310_050--Hb_000679_040 Hb_011310_050--Hb_001969_140 Hb_011310_050--Hb_001195_310 Hb_001216_110 Hb_001216_110 Hb_011310_050--Hb_001216_110 Hb_059741_010 Hb_059741_010 Hb_011310_050--Hb_059741_010 Hb_001195_310--Hb_001969_140 Hb_001195_310--Hb_000679_040 Hb_020586_010 Hb_020586_010 Hb_001195_310--Hb_020586_010 Hb_001195_310--Hb_000997_070 Hb_001969_140--Hb_001216_110 Hb_001969_140--Hb_000679_040 Hb_000959_300 Hb_000959_300 Hb_001969_140--Hb_000959_300 Hb_000562_100 Hb_000562_100 Hb_000997_070--Hb_000562_100 Hb_000997_070--Hb_010381_020 Hb_000997_070--Hb_001969_140 Hb_000418_020 Hb_000418_020 Hb_000997_070--Hb_000418_020 Hb_000679_040--Hb_001216_110 Hb_000254_070 Hb_000254_070 Hb_000679_040--Hb_000254_070 Hb_021576_070 Hb_021576_070 Hb_000679_040--Hb_021576_070 Hb_102763_010 Hb_102763_010 Hb_010381_020--Hb_102763_010 Hb_010407_030 Hb_010407_030 Hb_010381_020--Hb_010407_030 Hb_005000_090 Hb_005000_090 Hb_010381_020--Hb_005000_090 Hb_002311_130 Hb_002311_130 Hb_010381_020--Hb_002311_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5004 52.8539 94.153 189.433 44.4934 35.9291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.89077 9.58277 20.1695 87.573 143.938

CAGE analysis