Hb_020586_010

Information

Type -
Description -
Location Contig20586: 6722-18271
Sequence    

Annotation

kegg
ID rcu:RCOM_1271670
description Alpha-N-arabinofuranosidase 1 precursor, putative (EC:3.2.1.55)
nr
ID XP_002523672.1
description Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
swissprot
ID Q9SG80
description Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1 SV=1
trembl
ID B9SCF3
description Alpha-N-arabinofuranosidase 1, putative OS=Ricinus communis GN=RCOM_1271670 PE=4 SV=1
Gene Ontology
ID GO:0046556
description alpha-l-arabinofuranosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21217: 6726-18070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020586_010 0.0 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
2 Hb_001195_310 0.0848346235 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001969_140 0.1017667955 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
4 Hb_002129_020 0.1102911094 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
5 Hb_000003_310 0.1117613343 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
6 Hb_001216_110 0.1137899535 - - PREDICTED: protein GPR107-like [Jatropha curcas]
7 Hb_000679_040 0.1141172188 - - Cellulose synthase 1 [Theobroma cacao]
8 Hb_000997_070 0.1190152997 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
9 Hb_001195_090 0.1191649112 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
10 Hb_000684_310 0.1202475626 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
11 Hb_003894_010 0.1259818609 - - unnamed protein product [Vitis vinifera]
12 Hb_021576_070 0.1288290305 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
13 Hb_000418_020 0.1297673457 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
14 Hb_000167_040 0.1301634892 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
15 Hb_000926_340 0.1302255826 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
16 Hb_000665_190 0.1314540624 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000138_060 0.1319933929 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
18 Hb_001140_170 0.1320674505 - - PREDICTED: remorin [Jatropha curcas]
19 Hb_000012_400 0.1321239606 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
20 Hb_011828_010 0.1330438006 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]

Gene co-expression network

sample Hb_020586_010 Hb_020586_010 Hb_001195_310 Hb_001195_310 Hb_020586_010--Hb_001195_310 Hb_001969_140 Hb_001969_140 Hb_020586_010--Hb_001969_140 Hb_002129_020 Hb_002129_020 Hb_020586_010--Hb_002129_020 Hb_000003_310 Hb_000003_310 Hb_020586_010--Hb_000003_310 Hb_001216_110 Hb_001216_110 Hb_020586_010--Hb_001216_110 Hb_000679_040 Hb_000679_040 Hb_020586_010--Hb_000679_040 Hb_000167_040 Hb_000167_040 Hb_001195_310--Hb_000167_040 Hb_001195_310--Hb_001969_140 Hb_001195_310--Hb_000679_040 Hb_000997_070 Hb_000997_070 Hb_001195_310--Hb_000997_070 Hb_011310_050 Hb_011310_050 Hb_001195_310--Hb_011310_050 Hb_001969_140--Hb_000167_040 Hb_001969_140--Hb_001216_110 Hb_001969_140--Hb_000679_040 Hb_001969_140--Hb_011310_050 Hb_000959_300 Hb_000959_300 Hb_001969_140--Hb_000959_300 Hb_001195_090 Hb_001195_090 Hb_002129_020--Hb_001195_090 Hb_002129_020--Hb_001216_110 Hb_009674_010 Hb_009674_010 Hb_002129_020--Hb_009674_010 Hb_028639_030 Hb_028639_030 Hb_002129_020--Hb_028639_030 Hb_002157_270 Hb_002157_270 Hb_002129_020--Hb_002157_270 Hb_000254_070 Hb_000254_070 Hb_000003_310--Hb_000254_070 Hb_000701_030 Hb_000701_030 Hb_000003_310--Hb_000701_030 Hb_021576_070 Hb_021576_070 Hb_000003_310--Hb_021576_070 Hb_000684_310 Hb_000684_310 Hb_000003_310--Hb_000684_310 Hb_000003_310--Hb_000679_040 Hb_000418_020 Hb_000418_020 Hb_000003_310--Hb_000418_020 Hb_001216_110--Hb_000679_040 Hb_001216_110--Hb_028639_030 Hb_001216_110--Hb_021576_070 Hb_001216_110--Hb_001195_310 Hb_000679_040--Hb_011310_050 Hb_000679_040--Hb_000254_070 Hb_000679_040--Hb_021576_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49745 11.6267 16.0668 55.2379 9.71836 7.99511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.31192 3.25041 3.05162 13.1106 27.5859

CAGE analysis