Hb_000684_310

Information

Type -
Description -
Location Contig684: 312321-320421
Sequence    

Annotation

kegg
ID rcu:RCOM_0819670
description Nodulation receptor kinase precursor, putative (EC:2.7.11.25)
nr
ID XP_012082271.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
swissprot
ID C0LGI2
description Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana GN=At1g67720 PE=2 SV=1
trembl
ID A0A067K1X3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16457 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable lrr receptor-like serine threonine-protein kinase at1g67720

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54011: 312340-316465 , PASA_asmbl_54012: 317755-320166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_310 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
2 Hb_000003_310 0.0928221941 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
3 Hb_001216_110 0.1081057532 - - PREDICTED: protein GPR107-like [Jatropha curcas]
4 Hb_009674_010 0.1081506408 - - AAEL007687-PA [Aedes aegypti]
5 Hb_000679_040 0.10839585 - - Cellulose synthase 1 [Theobroma cacao]
6 Hb_000254_070 0.1100327666 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
7 Hb_001105_130 0.1140959748 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
8 Hb_028639_030 0.1142294247 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
9 Hb_001195_310 0.1149594383 - - ATP binding protein, putative [Ricinus communis]
10 Hb_021576_070 0.1151095909 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
11 Hb_005116_140 0.117042364 - - PREDICTED: RAN GTPase-activating protein 1 [Jatropha curcas]
12 Hb_000701_030 0.1179082729 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]
13 Hb_001195_090 0.1179617506 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
14 Hb_009674_050 0.1195361419 - - Endosomal P24A protein precursor, putative [Ricinus communis]
15 Hb_002129_020 0.1196313317 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
16 Hb_020586_010 0.1202475626 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
17 Hb_001969_140 0.1218848338 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
18 Hb_002311_130 0.1225029377 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
19 Hb_002805_090 0.1254697232 - - Ran GTPase binding protein, putative [Ricinus communis]
20 Hb_010042_020 0.1272035772 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000684_310 Hb_000684_310 Hb_000003_310 Hb_000003_310 Hb_000684_310--Hb_000003_310 Hb_001216_110 Hb_001216_110 Hb_000684_310--Hb_001216_110 Hb_009674_010 Hb_009674_010 Hb_000684_310--Hb_009674_010 Hb_000679_040 Hb_000679_040 Hb_000684_310--Hb_000679_040 Hb_000254_070 Hb_000254_070 Hb_000684_310--Hb_000254_070 Hb_001105_130 Hb_001105_130 Hb_000684_310--Hb_001105_130 Hb_000003_310--Hb_000254_070 Hb_000701_030 Hb_000701_030 Hb_000003_310--Hb_000701_030 Hb_021576_070 Hb_021576_070 Hb_000003_310--Hb_021576_070 Hb_000003_310--Hb_000679_040 Hb_000418_020 Hb_000418_020 Hb_000003_310--Hb_000418_020 Hb_001216_110--Hb_000679_040 Hb_028639_030 Hb_028639_030 Hb_001216_110--Hb_028639_030 Hb_001216_110--Hb_021576_070 Hb_001969_140 Hb_001969_140 Hb_001216_110--Hb_001969_140 Hb_002129_020 Hb_002129_020 Hb_001216_110--Hb_002129_020 Hb_001195_310 Hb_001195_310 Hb_001216_110--Hb_001195_310 Hb_009674_010--Hb_001216_110 Hb_009674_010--Hb_002129_020 Hb_009674_010--Hb_000679_040 Hb_001195_090 Hb_001195_090 Hb_009674_010--Hb_001195_090 Hb_009674_010--Hb_028639_030 Hb_011310_050 Hb_011310_050 Hb_000679_040--Hb_011310_050 Hb_000679_040--Hb_001195_310 Hb_000679_040--Hb_001969_140 Hb_000679_040--Hb_000254_070 Hb_000679_040--Hb_021576_070 Hb_000254_070--Hb_000701_030 Hb_007317_020 Hb_007317_020 Hb_000254_070--Hb_007317_020 Hb_000254_070--Hb_000418_020 Hb_000494_030 Hb_000494_030 Hb_000254_070--Hb_000494_030 Hb_002805_090 Hb_002805_090 Hb_001105_130--Hb_002805_090 Hb_001105_130--Hb_011310_050 Hb_001105_130--Hb_000679_040 Hb_010381_020 Hb_010381_020 Hb_001105_130--Hb_010381_020 Hb_004326_010 Hb_004326_010 Hb_001105_130--Hb_004326_010 Hb_000120_740 Hb_000120_740 Hb_001105_130--Hb_000120_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60951 4.09011 4.14847 16.0437 1.59659 4.05989
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64977 1.86627 1.90478 5.62457 10.9495

CAGE analysis