Hb_007317_020

Information

Type -
Description -
Location Contig7317: 16758-20125
Sequence    

Annotation

kegg
ID vvi:100258703
description transmembrane 9 superfamily member 5
nr
ID XP_012077855.1
description PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
swissprot
ID F4HW17
description Transmembrane 9 superfamily member 5 OS=Arabidopsis thaliana GN=TMN5 PE=2 SV=1
trembl
ID A0A067KAF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13574 PE=4 SV=1
Gene Ontology
ID GO:0016021
description phagocytic receptor 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56041: 17283-18013 , PASA_asmbl_56043: 18952-20113 , PASA_asmbl_56044: 19626-19955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007317_020 0.0 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
2 Hb_005854_040 0.0798957201 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000254_070 0.0872623712 - - PREDICTED: protein disulfide isomerase-like 1-6 [Jatropha curcas]
4 Hb_000157_140 0.0927827097 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
5 Hb_098533_010 0.1005680381 - - hypothetical protein L484_003492 [Morus notabilis]
6 Hb_010381_020 0.1009331611 - - Endosomal P24A protein precursor, putative [Ricinus communis]
7 Hb_001473_170 0.1010826101 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
8 Hb_000590_070 0.1041046086 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
9 Hb_000019_170 0.104312641 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
10 Hb_004030_060 0.1063091104 - - receptor protein kinase zmpk1, putative [Ricinus communis]
11 Hb_012053_020 0.1070947321 - - PREDICTED: magnesium transporter MRS2-11, chloroplastic [Jatropha curcas]
12 Hb_000284_220 0.1073191884 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
13 Hb_000494_030 0.1094415939 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
14 Hb_009193_010 0.1112918532 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
15 Hb_000167_040 0.1129470341 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
16 Hb_009535_030 0.1138233826 - - CP2 [Hevea brasiliensis]
17 Hb_015884_020 0.1154413203 - - PREDICTED: protein PIR [Jatropha curcas]
18 Hb_000418_020 0.1155887929 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
19 Hb_001235_130 0.1160294653 - - -
20 Hb_009296_020 0.1165695109 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_007317_020 Hb_007317_020 Hb_005854_040 Hb_005854_040 Hb_007317_020--Hb_005854_040 Hb_000254_070 Hb_000254_070 Hb_007317_020--Hb_000254_070 Hb_000157_140 Hb_000157_140 Hb_007317_020--Hb_000157_140 Hb_098533_010 Hb_098533_010 Hb_007317_020--Hb_098533_010 Hb_010381_020 Hb_010381_020 Hb_007317_020--Hb_010381_020 Hb_001473_170 Hb_001473_170 Hb_007317_020--Hb_001473_170 Hb_000027_200 Hb_000027_200 Hb_005854_040--Hb_000027_200 Hb_002687_200 Hb_002687_200 Hb_005854_040--Hb_002687_200 Hb_021977_010 Hb_021977_010 Hb_005854_040--Hb_021977_010 Hb_001226_130 Hb_001226_130 Hb_005854_040--Hb_001226_130 Hb_015884_020 Hb_015884_020 Hb_005854_040--Hb_015884_020 Hb_000003_310 Hb_000003_310 Hb_000254_070--Hb_000003_310 Hb_000701_030 Hb_000701_030 Hb_000254_070--Hb_000701_030 Hb_000679_040 Hb_000679_040 Hb_000254_070--Hb_000679_040 Hb_000418_020 Hb_000418_020 Hb_000254_070--Hb_000418_020 Hb_000494_030 Hb_000494_030 Hb_000254_070--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_000157_140--Hb_004030_060 Hb_007537_030 Hb_007537_030 Hb_000157_140--Hb_007537_030 Hb_007229_050 Hb_007229_050 Hb_000157_140--Hb_007229_050 Hb_011174_080 Hb_011174_080 Hb_000157_140--Hb_011174_080 Hb_000570_020 Hb_000570_020 Hb_000157_140--Hb_000570_020 Hb_009803_020 Hb_009803_020 Hb_098533_010--Hb_009803_020 Hb_098533_010--Hb_007229_050 Hb_006185_030 Hb_006185_030 Hb_098533_010--Hb_006185_030 Hb_098533_010--Hb_001473_170 Hb_009535_030 Hb_009535_030 Hb_098533_010--Hb_009535_030 Hb_102763_010 Hb_102763_010 Hb_010381_020--Hb_102763_010 Hb_010407_030 Hb_010407_030 Hb_010381_020--Hb_010407_030 Hb_005000_090 Hb_005000_090 Hb_010381_020--Hb_005000_090 Hb_000167_040 Hb_000167_040 Hb_010381_020--Hb_000167_040 Hb_000997_070 Hb_000997_070 Hb_010381_020--Hb_000997_070 Hb_002311_130 Hb_002311_130 Hb_010381_020--Hb_002311_130 Hb_001473_170--Hb_002311_130 Hb_010390_010 Hb_010390_010 Hb_001473_170--Hb_010390_010 Hb_000258_050 Hb_000258_050 Hb_001473_170--Hb_000258_050 Hb_001473_170--Hb_000494_030 Hb_001473_170--Hb_004030_060 Hb_007313_040 Hb_007313_040 Hb_001473_170--Hb_007313_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.841955 3.98197 6.23727 10.6447 2.57373 1.48869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33605 1.38319 1.78195 8.54341 8.8774

CAGE analysis