Hb_010390_010

Information

Type -
Description -
Location Contig10390: 4020-14089
Sequence    

Annotation

kegg
ID rcu:RCOM_1121690
description casein kinase, putative
nr
ID XP_002525432.1
description casein kinase, putative [Ricinus communis]
swissprot
ID P42168
description Casein kinase I isoform alpha OS=Caenorhabditis elegans GN=kin-19 PE=3 SV=1
trembl
ID B9SHG2
description Casein kinase, putative OS=Ricinus communis GN=RCOM_1121690 PE=3 SV=1
Gene Ontology
ID GO:0000166
description kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01447: 3940-14054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010390_010 0.0 - - casein kinase, putative [Ricinus communis]
2 Hb_000494_030 0.0870410566 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
3 Hb_004030_060 0.0893808737 - - receptor protein kinase zmpk1, putative [Ricinus communis]
4 Hb_000683_050 0.0897313137 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
5 Hb_005016_010 0.0911296094 - - AMP dependent CoA ligase, putative [Ricinus communis]
6 Hb_001473_170 0.0918553727 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
7 Hb_007416_070 0.0936247786 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
8 Hb_001951_060 0.1023669871 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
9 Hb_000601_040 0.1030761042 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
10 Hb_180378_010 0.1033566743 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
11 Hb_002631_130 0.1085346565 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
12 Hb_000800_090 0.1089430112 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
13 Hb_000181_460 0.1095764886 - - cmp-2-keto-3-deoctulosonate (cmp-kdo) cytidyltransferase, putative [Ricinus communis]
14 Hb_007537_030 0.1129038534 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
15 Hb_003517_070 0.1136128817 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
16 Hb_002611_010 0.1139422329 - - amino acid transporter, putative [Ricinus communis]
17 Hb_000258_050 0.1170919619 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X2 [Jatropha curcas]
18 Hb_000035_390 0.1176076179 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
19 Hb_009535_030 0.1176767815 - - CP2 [Hevea brasiliensis]
20 Hb_009803_020 0.1178746662 - - hypothetical protein PRUPE_ppa006317mg [Prunus persica]

Gene co-expression network

sample Hb_010390_010 Hb_010390_010 Hb_000494_030 Hb_000494_030 Hb_010390_010--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_010390_010--Hb_004030_060 Hb_000683_050 Hb_000683_050 Hb_010390_010--Hb_000683_050 Hb_005016_010 Hb_005016_010 Hb_010390_010--Hb_005016_010 Hb_001473_170 Hb_001473_170 Hb_010390_010--Hb_001473_170 Hb_007416_070 Hb_007416_070 Hb_010390_010--Hb_007416_070 Hb_000701_030 Hb_000701_030 Hb_000494_030--Hb_000701_030 Hb_000494_030--Hb_000683_050 Hb_000494_030--Hb_004030_060 Hb_021576_070 Hb_021576_070 Hb_000494_030--Hb_021576_070 Hb_000494_030--Hb_007416_070 Hb_000157_140 Hb_000157_140 Hb_004030_060--Hb_000157_140 Hb_004030_060--Hb_000683_050 Hb_009535_030 Hb_009535_030 Hb_004030_060--Hb_009535_030 Hb_005854_040 Hb_005854_040 Hb_004030_060--Hb_005854_040 Hb_000683_050--Hb_007416_070 Hb_001811_170 Hb_001811_170 Hb_000683_050--Hb_001811_170 Hb_000683_050--Hb_005854_040 Hb_180378_010 Hb_180378_010 Hb_005016_010--Hb_180378_010 Hb_000258_050 Hb_000258_050 Hb_005016_010--Hb_000258_050 Hb_002615_030 Hb_002615_030 Hb_005016_010--Hb_002615_030 Hb_001951_060 Hb_001951_060 Hb_005016_010--Hb_001951_060 Hb_177215_030 Hb_177215_030 Hb_005016_010--Hb_177215_030 Hb_002311_130 Hb_002311_130 Hb_001473_170--Hb_002311_130 Hb_001473_170--Hb_000258_050 Hb_001473_170--Hb_000494_030 Hb_001473_170--Hb_004030_060 Hb_007313_040 Hb_007313_040 Hb_001473_170--Hb_007313_040 Hb_000703_330 Hb_000703_330 Hb_007416_070--Hb_000703_330 Hb_000009_060 Hb_000009_060 Hb_007416_070--Hb_000009_060 Hb_000197_190 Hb_000197_190 Hb_007416_070--Hb_000197_190 Hb_000367_180 Hb_000367_180 Hb_007416_070--Hb_000367_180 Hb_007416_070--Hb_001811_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.81535 7.40191 7.76881 21.7456 2.35535 2.91561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.33177 4.23576 6.46419 16.3316 17.4321

CAGE analysis