Hb_000683_050

Information

Type -
Description -
Location Contig683: 48429-50269
Sequence    

Annotation

kegg
ID rcu:RCOM_0811560
description hypothetical protein
nr
ID XP_012067621.1
description PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
swissprot
ID Q8L9J9
description Probable carbohydrate esterase At4g34215 OS=Arabidopsis thaliana GN=At4g34215 PE=1 SV=2
trembl
ID A0A067LQD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22141 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53900: 48481-50269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000683_050 0.0 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
2 Hb_007416_070 0.0670818488 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
3 Hb_000494_030 0.0798980745 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
4 Hb_004030_060 0.0811474776 - - receptor protein kinase zmpk1, putative [Ricinus communis]
5 Hb_001811_170 0.0889611355 - - dynamin, putative [Ricinus communis]
6 Hb_010390_010 0.0897313137 - - casein kinase, putative [Ricinus communis]
7 Hb_005854_040 0.0914540573 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001900_100 0.094893753 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
9 Hb_006683_020 0.0951532839 - - PREDICTED: nucleosome assembly protein 1;4 [Jatropha curcas]
10 Hb_001616_070 0.0978064485 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
11 Hb_001951_060 0.0981341709 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
12 Hb_001226_130 0.0984635334 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
13 Hb_000009_060 0.1020720387 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
14 Hb_001473_170 0.102468401 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
15 Hb_012325_010 0.1031052975 - - hypothetical protein RCOM_0068670 [Ricinus communis]
16 Hb_007537_030 0.1038666082 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
17 Hb_000703_330 0.1042635893 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000342_050 0.1047164386 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
19 Hb_002631_130 0.1051984015 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
20 Hb_000125_180 0.1066792705 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000683_050 Hb_000683_050 Hb_007416_070 Hb_007416_070 Hb_000683_050--Hb_007416_070 Hb_000494_030 Hb_000494_030 Hb_000683_050--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_000683_050--Hb_004030_060 Hb_001811_170 Hb_001811_170 Hb_000683_050--Hb_001811_170 Hb_010390_010 Hb_010390_010 Hb_000683_050--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_000683_050--Hb_005854_040 Hb_000703_330 Hb_000703_330 Hb_007416_070--Hb_000703_330 Hb_000009_060 Hb_000009_060 Hb_007416_070--Hb_000009_060 Hb_000197_190 Hb_000197_190 Hb_007416_070--Hb_000197_190 Hb_000367_180 Hb_000367_180 Hb_007416_070--Hb_000367_180 Hb_007416_070--Hb_001811_170 Hb_000701_030 Hb_000701_030 Hb_000494_030--Hb_000701_030 Hb_000494_030--Hb_004030_060 Hb_000494_030--Hb_010390_010 Hb_021576_070 Hb_021576_070 Hb_000494_030--Hb_021576_070 Hb_000494_030--Hb_007416_070 Hb_000157_140 Hb_000157_140 Hb_004030_060--Hb_000157_140 Hb_009535_030 Hb_009535_030 Hb_004030_060--Hb_009535_030 Hb_004030_060--Hb_010390_010 Hb_004030_060--Hb_005854_040 Hb_001226_130 Hb_001226_130 Hb_001811_170--Hb_001226_130 Hb_000342_050 Hb_000342_050 Hb_001811_170--Hb_000342_050 Hb_001141_240 Hb_001141_240 Hb_001811_170--Hb_001141_240 Hb_006210_010 Hb_006210_010 Hb_001811_170--Hb_006210_010 Hb_001587_030 Hb_001587_030 Hb_001811_170--Hb_001587_030 Hb_001085_080 Hb_001085_080 Hb_001811_170--Hb_001085_080 Hb_005016_010 Hb_005016_010 Hb_010390_010--Hb_005016_010 Hb_001473_170 Hb_001473_170 Hb_010390_010--Hb_001473_170 Hb_010390_010--Hb_007416_070 Hb_000027_200 Hb_000027_200 Hb_005854_040--Hb_000027_200 Hb_007317_020 Hb_007317_020 Hb_005854_040--Hb_007317_020 Hb_002687_200 Hb_002687_200 Hb_005854_040--Hb_002687_200 Hb_021977_010 Hb_021977_010 Hb_005854_040--Hb_021977_010 Hb_005854_040--Hb_001226_130 Hb_015884_020 Hb_015884_020 Hb_005854_040--Hb_015884_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.47589 11.1734 12.9694 24.2024 3.27471 4.25508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.89775 6.15656 6.661 22.5296 16.8132

CAGE analysis