Hb_004030_060

Information

Type -
Description -
Location Contig4030: 86258-88669
Sequence    

Annotation

kegg
ID rcu:RCOM_1157190
description receptor protein kinase zmpk1, putative
nr
ID XP_002529861.1
description receptor protein kinase zmpk1, putative [Ricinus communis]
swissprot
ID P17801
description Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2
trembl
ID B9SV42
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_1157190 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor protein kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39966: 89193-89580 , PASA_asmbl_39968: 89657-103473
cDNA
(Sanger)
(ID:Location)		 014_J05.ab1: 89657-97172

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004030_060 0.0 - - receptor protein kinase zmpk1, putative [Ricinus communis]
2 Hb_000157_140 0.0803891558 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
3 Hb_000683_050 0.0811474776 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
4 Hb_000494_030 0.0835456674 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
5 Hb_009535_030 0.0879752368 - - CP2 [Hevea brasiliensis]
6 Hb_010390_010 0.0893808737 - - casein kinase, putative [Ricinus communis]
7 Hb_005854_040 0.0926129993 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001811_170 0.0934040254 - - dynamin, putative [Ricinus communis]
9 Hb_001473_170 0.0949595337 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
10 Hb_007537_030 0.0954391493 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
11 Hb_007416_070 0.0959070924 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
12 Hb_001235_130 0.096477157 - - -
13 Hb_001900_100 0.1022306106 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
14 Hb_000540_100 0.1025385055 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
15 Hb_002311_130 0.1033422375 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
16 Hb_002046_060 0.1056305069 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
17 Hb_007229_050 0.1062017183 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
18 Hb_007317_020 0.1063091104 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
19 Hb_000125_180 0.1086268939 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
20 Hb_000701_030 0.109091376 - - Sodium/hydrogen exchanger 6 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_004030_060 Hb_004030_060 Hb_000157_140 Hb_000157_140 Hb_004030_060--Hb_000157_140 Hb_000683_050 Hb_000683_050 Hb_004030_060--Hb_000683_050 Hb_000494_030 Hb_000494_030 Hb_004030_060--Hb_000494_030 Hb_009535_030 Hb_009535_030 Hb_004030_060--Hb_009535_030 Hb_010390_010 Hb_010390_010 Hb_004030_060--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_004030_060--Hb_005854_040 Hb_007537_030 Hb_007537_030 Hb_000157_140--Hb_007537_030 Hb_007229_050 Hb_007229_050 Hb_000157_140--Hb_007229_050 Hb_007317_020 Hb_007317_020 Hb_000157_140--Hb_007317_020 Hb_011174_080 Hb_011174_080 Hb_000157_140--Hb_011174_080 Hb_000570_020 Hb_000570_020 Hb_000157_140--Hb_000570_020 Hb_007416_070 Hb_007416_070 Hb_000683_050--Hb_007416_070 Hb_000683_050--Hb_000494_030 Hb_001811_170 Hb_001811_170 Hb_000683_050--Hb_001811_170 Hb_000683_050--Hb_010390_010 Hb_000683_050--Hb_005854_040 Hb_000701_030 Hb_000701_030 Hb_000494_030--Hb_000701_030 Hb_000494_030--Hb_010390_010 Hb_021576_070 Hb_021576_070 Hb_000494_030--Hb_021576_070 Hb_000494_030--Hb_007416_070 Hb_029584_100 Hb_029584_100 Hb_009535_030--Hb_029584_100 Hb_001235_130 Hb_001235_130 Hb_009535_030--Hb_001235_130 Hb_001247_270 Hb_001247_270 Hb_009535_030--Hb_001247_270 Hb_009535_030--Hb_007229_050 Hb_001473_170 Hb_001473_170 Hb_009535_030--Hb_001473_170 Hb_005016_010 Hb_005016_010 Hb_010390_010--Hb_005016_010 Hb_010390_010--Hb_001473_170 Hb_010390_010--Hb_007416_070 Hb_000027_200 Hb_000027_200 Hb_005854_040--Hb_000027_200 Hb_005854_040--Hb_007317_020 Hb_002687_200 Hb_002687_200 Hb_005854_040--Hb_002687_200 Hb_021977_010 Hb_021977_010 Hb_005854_040--Hb_021977_010 Hb_001226_130 Hb_001226_130 Hb_005854_040--Hb_001226_130 Hb_015884_020 Hb_015884_020 Hb_005854_040--Hb_015884_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.636352 3.90419 3.28113 7.0777 0.960659 1.24286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59822 1.11306 1.76232 5.17907 5.18844

CAGE analysis