Hb_021977_010

Information

Type -
Description -
Location Contig21977: 9258-12659
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04570g
description POPTRDRAFT_832515; peptidase M1 family protein
nr
ID XP_012073647.1
description PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
swissprot
ID Q9FY49
description Leukotriene A-4 hydrolase homolog OS=Arabidopsis thaliana GN=LKHA4 PE=2 SV=1
trembl
ID A0A067LMU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06656 PE=4 SV=1
Gene Ontology
ID GO:0005829
description leukotriene a-4 hydrolase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22602: 9450-12609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021977_010 0.0 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
2 Hb_001414_010 0.0504540119 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
3 Hb_003661_010 0.0690348143 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
4 Hb_000599_360 0.0715133818 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
5 Hb_009476_120 0.0729768701 - - Clathrin heavy chain 1 [Glycine soja]
6 Hb_001998_220 0.0766945123 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
7 Hb_158845_060 0.0774424478 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
8 Hb_000300_030 0.0781658532 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
9 Hb_001811_170 0.0784100558 - - dynamin, putative [Ricinus communis]
10 Hb_000984_140 0.0787245519 - - PREDICTED: xylulose kinase [Jatropha curcas]
11 Hb_001159_060 0.0796686149 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
12 Hb_160608_010 0.07980674 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
13 Hb_008165_020 0.0801212737 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
14 Hb_000027_200 0.0810351108 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
15 Hb_005854_040 0.0823087485 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000359_190 0.0837824823 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
17 Hb_001226_130 0.0838768032 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
18 Hb_002739_120 0.0850072844 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
19 Hb_000020_160 0.0860551298 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
20 Hb_000103_290 0.086495236 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_021977_010 Hb_021977_010 Hb_001414_010 Hb_001414_010 Hb_021977_010--Hb_001414_010 Hb_003661_010 Hb_003661_010 Hb_021977_010--Hb_003661_010 Hb_000599_360 Hb_000599_360 Hb_021977_010--Hb_000599_360 Hb_009476_120 Hb_009476_120 Hb_021977_010--Hb_009476_120 Hb_001998_220 Hb_001998_220 Hb_021977_010--Hb_001998_220 Hb_158845_060 Hb_158845_060 Hb_021977_010--Hb_158845_060 Hb_001414_010--Hb_003661_010 Hb_001414_010--Hb_009476_120 Hb_008165_020 Hb_008165_020 Hb_001414_010--Hb_008165_020 Hb_000300_030 Hb_000300_030 Hb_001414_010--Hb_000300_030 Hb_160608_010 Hb_160608_010 Hb_001414_010--Hb_160608_010 Hb_000844_050 Hb_000844_050 Hb_003661_010--Hb_000844_050 Hb_048476_080 Hb_048476_080 Hb_003661_010--Hb_048476_080 Hb_003661_010--Hb_000300_030 Hb_003661_010--Hb_160608_010 Hb_003680_020 Hb_003680_020 Hb_003661_010--Hb_003680_020 Hb_000599_360--Hb_158845_060 Hb_003964_110 Hb_003964_110 Hb_000599_360--Hb_003964_110 Hb_000599_360--Hb_160608_010 Hb_005741_040 Hb_005741_040 Hb_000599_360--Hb_005741_040 Hb_080147_050 Hb_080147_050 Hb_000599_360--Hb_080147_050 Hb_009476_120--Hb_008165_020 Hb_001511_180 Hb_001511_180 Hb_009476_120--Hb_001511_180 Hb_009476_120--Hb_160608_010 Hb_003124_270 Hb_003124_270 Hb_009476_120--Hb_003124_270 Hb_001702_050 Hb_001702_050 Hb_001998_220--Hb_001702_050 Hb_000809_250 Hb_000809_250 Hb_001998_220--Hb_000809_250 Hb_102763_010 Hb_102763_010 Hb_001998_220--Hb_102763_010 Hb_005000_090 Hb_005000_090 Hb_001998_220--Hb_005000_090 Hb_001998_220--Hb_001414_010 Hb_158845_060--Hb_003964_110 Hb_000297_030 Hb_000297_030 Hb_158845_060--Hb_000297_030 Hb_158845_060--Hb_080147_050 Hb_001085_080 Hb_001085_080 Hb_158845_060--Hb_001085_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63383 17.3788 16.9481 23.7785 8.51144 7.44719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.45748 4.21194 5.12594 16.8969 21.1124

CAGE analysis