Hb_001085_080

Information

Type -
Description -
Location Contig1085: 42617-44852
Sequence    

Annotation

kegg
ID tcc:TCM_043087
description GTP binding Elongation factor Tu family protein isoform 1
nr
ID ADR70874.1
description eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
swissprot
ID O49169
description Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1
trembl
ID V5IV14
description Elongation factor 1-alpha OS=Hevea brasiliensis GN=EF1A1 PE=2 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 1-alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02559: 41858-44887
cDNA
(Sanger)
(ID:Location)		 003_B04.ab1: 41860-43750 , 020_F16.ab1: 41860-43800 , 020_I11.ab1: 41858-43801 , 025_K06.ab1: 41860-43800 , 027_B15.ab1: 41872-43773 , 040_A13.ab1: 41860-43812

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_080 0.0 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
2 Hb_001097_040 0.0599531064 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
3 Hb_000579_130 0.0609127016 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_001558_040 0.0765236573 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
5 Hb_158845_060 0.0771705814 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
6 Hb_002739_120 0.0776074086 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
7 Hb_001811_170 0.078381845 - - dynamin, putative [Ricinus communis]
8 Hb_001250_050 0.079446136 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
9 Hb_009615_160 0.0824606629 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
10 Hb_007137_050 0.0828813349 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_000342_050 0.0837763209 - - hypothetical protein POPTR_0006s24710g [Populus trichocarpa]
12 Hb_008289_040 0.0850455536 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
13 Hb_016172_030 0.0851274167 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
14 Hb_002007_260 0.0859924272 - - beta-mannosidase, putative [Ricinus communis]
15 Hb_000152_700 0.0867751595 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
16 Hb_005970_010 0.087398508 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
17 Hb_001587_030 0.0891262814 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
18 Hb_021977_010 0.089799601 - - PREDICTED: leukotriene A-4 hydrolase homolog [Jatropha curcas]
19 Hb_001159_030 0.0904214622 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
20 Hb_044486_020 0.0908259813 - - CASTOR protein [Glycine max]

Gene co-expression network

sample Hb_001085_080 Hb_001085_080 Hb_001097_040 Hb_001097_040 Hb_001085_080--Hb_001097_040 Hb_000579_130 Hb_000579_130 Hb_001085_080--Hb_000579_130 Hb_001558_040 Hb_001558_040 Hb_001085_080--Hb_001558_040 Hb_158845_060 Hb_158845_060 Hb_001085_080--Hb_158845_060 Hb_002739_120 Hb_002739_120 Hb_001085_080--Hb_002739_120 Hb_001811_170 Hb_001811_170 Hb_001085_080--Hb_001811_170 Hb_003038_040 Hb_003038_040 Hb_001097_040--Hb_003038_040 Hb_007137_050 Hb_007137_050 Hb_001097_040--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_001097_040--Hb_000023_300 Hb_001159_030 Hb_001159_030 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700 Hb_010042_030 Hb_010042_030 Hb_000579_130--Hb_010042_030 Hb_000579_130--Hb_001558_040 Hb_016172_030 Hb_016172_030 Hb_000579_130--Hb_016172_030 Hb_000579_130--Hb_007137_050 Hb_002007_260 Hb_002007_260 Hb_000579_130--Hb_002007_260 Hb_001307_240 Hb_001307_240 Hb_001558_040--Hb_001307_240 Hb_001558_040--Hb_002007_260 Hb_000020_160 Hb_000020_160 Hb_001558_040--Hb_000020_160 Hb_001558_040--Hb_158845_060 Hb_003964_110 Hb_003964_110 Hb_158845_060--Hb_003964_110 Hb_000599_360 Hb_000599_360 Hb_158845_060--Hb_000599_360 Hb_000297_030 Hb_000297_030 Hb_158845_060--Hb_000297_030 Hb_080147_050 Hb_080147_050 Hb_158845_060--Hb_080147_050 Hb_021977_010 Hb_021977_010 Hb_158845_060--Hb_021977_010 Hb_001250_050 Hb_001250_050 Hb_002739_120--Hb_001250_050 Hb_003777_030 Hb_003777_030 Hb_002739_120--Hb_003777_030 Hb_000418_020 Hb_000418_020 Hb_002739_120--Hb_000418_020 Hb_000197_180 Hb_000197_180 Hb_002739_120--Hb_000197_180 Hb_001009_150 Hb_001009_150 Hb_002739_120--Hb_001009_150 Hb_001226_130 Hb_001226_130 Hb_001811_170--Hb_001226_130 Hb_000342_050 Hb_000342_050 Hb_001811_170--Hb_000342_050 Hb_001141_240 Hb_001141_240 Hb_001811_170--Hb_001141_240 Hb_006210_010 Hb_006210_010 Hb_001811_170--Hb_006210_010 Hb_001587_030 Hb_001587_030 Hb_001811_170--Hb_001587_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
99.0058 307.158 271.096 479.674 163.166 164.131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.0119 135.174 97.215 368.137 259.154

CAGE analysis