Hb_001307_240

Information

Type transcription factor
Description TF Family: SET
Location Contig1307: 198740-203675
Sequence    

Annotation

kegg
ID rcu:RCOM_0542660
description set domain protein, putative (EC:2.1.1.43)
nr
ID XP_012085242.1
description PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
swissprot
ID Q9FNC7
description Histone-lysine N-methyltransferase SUVR2 OS=Arabidopsis thaliana GN=SUVR2 PE=2 SV=2
trembl
ID A0A067JR91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17634 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase suvr2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09118: 197998-203696 , PASA_asmbl_09120: 204409-204531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001307_240 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
2 Hb_001558_040 0.0666361191 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
3 Hb_004837_280 0.0754000001 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
4 Hb_002007_260 0.0776637014 - - beta-mannosidase, putative [Ricinus communis]
5 Hb_001552_030 0.0795384223 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
6 Hb_001085_290 0.0832834851 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
7 Hb_000017_230 0.0832881402 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
8 Hb_001246_130 0.0863688969 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
9 Hb_000001_170 0.0868725434 - - amino acid transporter, putative [Ricinus communis]
10 Hb_019840_030 0.0873874985 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
11 Hb_002596_060 0.0881088409 - - conserved hypothetical protein [Ricinus communis]
12 Hb_188063_050 0.0881991495 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
13 Hb_000085_450 0.0884730146 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
14 Hb_002995_040 0.0900650425 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
15 Hb_086063_020 0.0908222084 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
16 Hb_060980_010 0.0917876074 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
17 Hb_002740_090 0.0930497946 - - PREDICTED: putative membrane-bound O-acyltransferase C24H6.01c [Jatropha curcas]
18 Hb_003020_100 0.093777597 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
19 Hb_001141_310 0.0948033899 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
20 Hb_021165_010 0.095489232 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001307_240 Hb_001307_240 Hb_001558_040 Hb_001558_040 Hb_001307_240--Hb_001558_040 Hb_004837_280 Hb_004837_280 Hb_001307_240--Hb_004837_280 Hb_002007_260 Hb_002007_260 Hb_001307_240--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001307_240--Hb_001552_030 Hb_001085_290 Hb_001085_290 Hb_001307_240--Hb_001085_290 Hb_000017_230 Hb_000017_230 Hb_001307_240--Hb_000017_230 Hb_001558_040--Hb_002007_260 Hb_000579_130 Hb_000579_130 Hb_001558_040--Hb_000579_130 Hb_001085_080 Hb_001085_080 Hb_001558_040--Hb_001085_080 Hb_000020_160 Hb_000020_160 Hb_001558_040--Hb_000020_160 Hb_158845_060 Hb_158845_060 Hb_001558_040--Hb_158845_060 Hb_000342_050 Hb_000342_050 Hb_004837_280--Hb_000342_050 Hb_001587_030 Hb_001587_030 Hb_004837_280--Hb_001587_030 Hb_002596_060 Hb_002596_060 Hb_004837_280--Hb_002596_060 Hb_107298_010 Hb_107298_010 Hb_004837_280--Hb_107298_010 Hb_001226_130 Hb_001226_130 Hb_004837_280--Hb_001226_130 Hb_001246_130 Hb_001246_130 Hb_002007_260--Hb_001246_130 Hb_010042_030 Hb_010042_030 Hb_002007_260--Hb_010042_030 Hb_002007_260--Hb_001085_290 Hb_001159_030 Hb_001159_030 Hb_002007_260--Hb_001159_030 Hb_030982_010 Hb_030982_010 Hb_002007_260--Hb_030982_010 Hb_001552_030--Hb_000017_230 Hb_001488_220 Hb_001488_220 Hb_001552_030--Hb_001488_220 Hb_001552_030--Hb_001085_290 Hb_004109_370 Hb_004109_370 Hb_001552_030--Hb_004109_370 Hb_002784_030 Hb_002784_030 Hb_001552_030--Hb_002784_030 Hb_121089_030 Hb_121089_030 Hb_001552_030--Hb_121089_030 Hb_000088_050 Hb_000088_050 Hb_001085_290--Hb_000088_050 Hb_001085_290--Hb_000017_230 Hb_060980_010 Hb_060980_010 Hb_001085_290--Hb_060980_010 Hb_085742_010 Hb_085742_010 Hb_001085_290--Hb_085742_010 Hb_000017_230--Hb_121089_030 Hb_021165_010 Hb_021165_010 Hb_000017_230--Hb_021165_010 Hb_092000_010 Hb_092000_010 Hb_000017_230--Hb_092000_010 Hb_000017_230--Hb_000088_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.89554 5.26837 6.5933 8.60276 3.10577 4.63039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.76502 2.35823 2.00663 8.88025 5.69781

CAGE analysis