Hb_085742_010

Information

Type -
Description -
Location Contig85742: 120-3924
Sequence    

Annotation

kegg
ID pop:POPTR_0005s05170g
description hypothetical protein
nr
ID XP_006382761.1
description hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
swissprot
ID Q9FMD3
description Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1
trembl
ID U5GAN5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s05170g PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60658: 1842-3486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_085742_010 0.0 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
2 Hb_000088_050 0.0615033572 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
3 Hb_000739_180 0.070045067 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
4 Hb_001085_290 0.0714364727 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
5 Hb_000879_040 0.0759332143 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
6 Hb_000017_230 0.0796513607 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
7 Hb_092000_010 0.0812733915 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
8 Hb_003186_020 0.0850059439 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
9 Hb_000181_100 0.0851045575 - - PREDICTED: protein starmaker [Jatropha curcas]
10 Hb_000103_570 0.0862039061 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
11 Hb_000373_080 0.0865147232 - - PREDICTED: serine decarboxylase [Jatropha curcas]
12 Hb_002055_020 0.0878933027 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
13 Hb_000214_050 0.0879018577 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
14 Hb_001935_160 0.0880260036 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
15 Hb_000635_090 0.0887434185 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
16 Hb_128548_010 0.0890497815 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008247_020 0.0901646424 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]
18 Hb_000610_040 0.0903997859 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
19 Hb_000321_140 0.0905186964 - - RNA-binding protein, putative [Ricinus communis]
20 Hb_000529_060 0.0908369671 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_085742_010 Hb_085742_010 Hb_000088_050 Hb_000088_050 Hb_085742_010--Hb_000088_050 Hb_000739_180 Hb_000739_180 Hb_085742_010--Hb_000739_180 Hb_001085_290 Hb_001085_290 Hb_085742_010--Hb_001085_290 Hb_000879_040 Hb_000879_040 Hb_085742_010--Hb_000879_040 Hb_000017_230 Hb_000017_230 Hb_085742_010--Hb_000017_230 Hb_092000_010 Hb_092000_010 Hb_085742_010--Hb_092000_010 Hb_000088_050--Hb_001085_290 Hb_000088_050--Hb_000017_230 Hb_001377_350 Hb_001377_350 Hb_000088_050--Hb_001377_350 Hb_000088_050--Hb_092000_010 Hb_001381_050 Hb_001381_050 Hb_000088_050--Hb_001381_050 Hb_000120_910 Hb_000120_910 Hb_000739_180--Hb_000120_910 Hb_001257_030 Hb_001257_030 Hb_000739_180--Hb_001257_030 Hb_009083_070 Hb_009083_070 Hb_000739_180--Hb_009083_070 Hb_002276_240 Hb_002276_240 Hb_000739_180--Hb_002276_240 Hb_008247_020 Hb_008247_020 Hb_000739_180--Hb_008247_020 Hb_001085_290--Hb_000017_230 Hb_002007_260 Hb_002007_260 Hb_001085_290--Hb_002007_260 Hb_001552_030 Hb_001552_030 Hb_001085_290--Hb_001552_030 Hb_060980_010 Hb_060980_010 Hb_001085_290--Hb_060980_010 Hb_001318_070 Hb_001318_070 Hb_000879_040--Hb_001318_070 Hb_000243_210 Hb_000243_210 Hb_000879_040--Hb_000243_210 Hb_012055_110 Hb_012055_110 Hb_000879_040--Hb_012055_110 Hb_000027_050 Hb_000027_050 Hb_000879_040--Hb_000027_050 Hb_000099_040 Hb_000099_040 Hb_000879_040--Hb_000099_040 Hb_001430_080 Hb_001430_080 Hb_000879_040--Hb_001430_080 Hb_121089_030 Hb_121089_030 Hb_000017_230--Hb_121089_030 Hb_021165_010 Hb_021165_010 Hb_000017_230--Hb_021165_010 Hb_000017_230--Hb_001552_030 Hb_000017_230--Hb_092000_010 Hb_002045_250 Hb_002045_250 Hb_092000_010--Hb_002045_250 Hb_001935_160 Hb_001935_160 Hb_092000_010--Hb_001935_160 Hb_092000_010--Hb_001085_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.38005 6.92025 8.51139 5.9906 3.98438 5.80361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44403 2.72184 4.68899 7.50694 6.89166

CAGE analysis