Hb_121089_030

Information

Type -
Description -
Location Contig121089: 36028-42829
Sequence    

Annotation

kegg
ID rcu:RCOM_1692160
description dynamin, putative
nr
ID XP_012086708.1
description PREDICTED: dynamin-related protein 5A [Jatropha curcas]
swissprot
ID Q39828
description Dynamin-related protein 5A OS=Glycine max PE=2 SV=1
trembl
ID A0A067JN46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20443 PE=3 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06494: 36103-42739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121089_030 0.0 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
2 Hb_000017_230 0.0542252688 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
3 Hb_030982_010 0.0616871474 - - conserved hypothetical protein [Ricinus communis]
4 Hb_021165_010 0.0666907463 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
5 Hb_000320_290 0.0676992739 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
6 Hb_001552_030 0.0690796157 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
7 Hb_010042_030 0.0759439355 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
8 Hb_006120_050 0.076818173 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
9 Hb_001141_310 0.0787302464 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
10 Hb_159809_030 0.0792485352 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
11 Hb_001257_030 0.0800866683 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
12 Hb_000702_090 0.0802221872 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
13 Hb_000684_080 0.0814503749 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
14 Hb_001856_180 0.0840193445 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
15 Hb_001114_110 0.0841497835 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
16 Hb_000212_420 0.084292899 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
17 Hb_000161_210 0.0853667248 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
18 Hb_001246_130 0.0854673913 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
19 Hb_008511_020 0.0865127082 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
20 Hb_086063_020 0.0867509958 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_121089_030 Hb_121089_030 Hb_000017_230 Hb_000017_230 Hb_121089_030--Hb_000017_230 Hb_030982_010 Hb_030982_010 Hb_121089_030--Hb_030982_010 Hb_021165_010 Hb_021165_010 Hb_121089_030--Hb_021165_010 Hb_000320_290 Hb_000320_290 Hb_121089_030--Hb_000320_290 Hb_001552_030 Hb_001552_030 Hb_121089_030--Hb_001552_030 Hb_010042_030 Hb_010042_030 Hb_121089_030--Hb_010042_030 Hb_000017_230--Hb_021165_010 Hb_000017_230--Hb_001552_030 Hb_092000_010 Hb_092000_010 Hb_000017_230--Hb_092000_010 Hb_001085_290 Hb_001085_290 Hb_000017_230--Hb_001085_290 Hb_000088_050 Hb_000088_050 Hb_000017_230--Hb_000088_050 Hb_001246_130 Hb_001246_130 Hb_030982_010--Hb_001246_130 Hb_030982_010--Hb_000320_290 Hb_006120_050 Hb_006120_050 Hb_030982_010--Hb_006120_050 Hb_000163_090 Hb_000163_090 Hb_030982_010--Hb_000163_090 Hb_030982_010--Hb_021165_010 Hb_000702_090 Hb_000702_090 Hb_021165_010--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_021165_010--Hb_016172_030 Hb_008289_040 Hb_008289_040 Hb_021165_010--Hb_008289_040 Hb_060980_010 Hb_060980_010 Hb_021165_010--Hb_060980_010 Hb_001114_110 Hb_001114_110 Hb_021165_010--Hb_001114_110 Hb_000054_040 Hb_000054_040 Hb_000320_290--Hb_000054_040 Hb_000320_290--Hb_010042_030 Hb_188063_050 Hb_188063_050 Hb_000320_290--Hb_188063_050 Hb_000098_050 Hb_000098_050 Hb_000320_290--Hb_000098_050 Hb_001488_220 Hb_001488_220 Hb_001552_030--Hb_001488_220 Hb_001552_030--Hb_001085_290 Hb_004109_370 Hb_004109_370 Hb_001552_030--Hb_004109_370 Hb_002784_030 Hb_002784_030 Hb_001552_030--Hb_002784_030 Hb_000085_260 Hb_000085_260 Hb_010042_030--Hb_000085_260 Hb_001159_030 Hb_001159_030 Hb_010042_030--Hb_001159_030 Hb_005062_110 Hb_005062_110 Hb_010042_030--Hb_005062_110 Hb_002007_260 Hb_002007_260 Hb_010042_030--Hb_002007_260 Hb_000579_130 Hb_000579_130 Hb_010042_030--Hb_000579_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.4958 37.2032 43.8775 60.8429 26.7172 30.8628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3733 11.9829 24.7245 39.3108 31.0966

CAGE analysis