Hb_001246_130

Information

Type -
Description -
Location Contig1246: 107086-122157
Sequence    

Annotation

kegg
ID pop:POPTR_0002s13630g
description POPTRDRAFT_816506; malate oxidoreductase family protein
nr
ID XP_012083764.1
description PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
swissprot
ID P37221
description NAD-dependent malic enzyme 62 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1
trembl
ID B9GP43
description Malic enzyme OS=Populus trichocarpa GN=POPTR_0002s13630g PE=3 SV=1
Gene Ontology
ID GO:0009507
description nad-dependent malic enzyme 62 kda mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07442: 107115-111192 , PASA_asmbl_07444: 115718-116080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001246_130 0.0 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
2 Hb_002007_260 0.0562129409 - - beta-mannosidase, putative [Ricinus communis]
3 Hb_030982_010 0.0693233166 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006120_050 0.0769377011 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
5 Hb_000054_040 0.0784477246 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
6 Hb_002552_040 0.0794156663 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
7 Hb_002045_170 0.0801783206 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
8 Hb_011310_110 0.0820028335 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
9 Hb_000503_020 0.0822548783 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
10 Hb_000017_230 0.0835800841 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
11 Hb_010042_030 0.0840885031 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
12 Hb_002301_030 0.0841880083 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_006970_020 0.0844293996 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
14 Hb_001159_030 0.0850261414 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
15 Hb_001085_290 0.085407647 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
16 Hb_121089_030 0.0854673913 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
17 Hb_002687_180 0.0860641749 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
18 Hb_001307_240 0.0863688969 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
19 Hb_001558_040 0.0864401234 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
20 Hb_005741_040 0.0874131792 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]

Gene co-expression network

sample Hb_001246_130 Hb_001246_130 Hb_002007_260 Hb_002007_260 Hb_001246_130--Hb_002007_260 Hb_030982_010 Hb_030982_010 Hb_001246_130--Hb_030982_010 Hb_006120_050 Hb_006120_050 Hb_001246_130--Hb_006120_050 Hb_000054_040 Hb_000054_040 Hb_001246_130--Hb_000054_040 Hb_002552_040 Hb_002552_040 Hb_001246_130--Hb_002552_040 Hb_002045_170 Hb_002045_170 Hb_001246_130--Hb_002045_170 Hb_010042_030 Hb_010042_030 Hb_002007_260--Hb_010042_030 Hb_001085_290 Hb_001085_290 Hb_002007_260--Hb_001085_290 Hb_001159_030 Hb_001159_030 Hb_002007_260--Hb_001159_030 Hb_001558_040 Hb_001558_040 Hb_002007_260--Hb_001558_040 Hb_002007_260--Hb_030982_010 Hb_121089_030 Hb_121089_030 Hb_030982_010--Hb_121089_030 Hb_000320_290 Hb_000320_290 Hb_030982_010--Hb_000320_290 Hb_030982_010--Hb_006120_050 Hb_000163_090 Hb_000163_090 Hb_030982_010--Hb_000163_090 Hb_021165_010 Hb_021165_010 Hb_030982_010--Hb_021165_010 Hb_011310_110 Hb_011310_110 Hb_006120_050--Hb_011310_110 Hb_010672_020 Hb_010672_020 Hb_006120_050--Hb_010672_020 Hb_002272_240 Hb_002272_240 Hb_006120_050--Hb_002272_240 Hb_002687_180 Hb_002687_180 Hb_006120_050--Hb_002687_180 Hb_006120_050--Hb_121089_030 Hb_000261_210 Hb_000261_210 Hb_000054_040--Hb_000261_210 Hb_000503_020 Hb_000503_020 Hb_000054_040--Hb_000503_020 Hb_000054_040--Hb_000320_290 Hb_002473_050 Hb_002473_050 Hb_000054_040--Hb_002473_050 Hb_005062_110 Hb_005062_110 Hb_000054_040--Hb_005062_110 Hb_000815_300 Hb_000815_300 Hb_002552_040--Hb_000815_300 Hb_002552_040--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_002552_040--Hb_004228_120 Hb_001279_190 Hb_001279_190 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_002552_040--Hb_006970_020 Hb_004724_390 Hb_004724_390 Hb_002045_170--Hb_004724_390 Hb_000954_010 Hb_000954_010 Hb_002045_170--Hb_000954_010 Hb_001250_050 Hb_001250_050 Hb_002045_170--Hb_001250_050 Hb_002045_170--Hb_002687_180 Hb_000317_110 Hb_000317_110 Hb_002045_170--Hb_000317_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8999 24.9585 39.5942 50.3806 18.8799 19.8307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6774 9.92924 15.4924 35.4371 36.778

CAGE analysis