Hb_010672_020

Information

Type -
Description -
Location Contig10672: 10409-11551
Sequence    

Annotation

kegg
ID rcu:RCOM_1256440
description ATP synthase gamma chain 2, chloroplast, putative (EC:3.6.3.14)
nr
ID XP_012070838.1
description PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
swissprot
ID P29790
description ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1
trembl
ID A0A067L4Y2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00896 PE=3 SV=1
Gene Ontology
ID GO:0009544
description atp synthase gamma chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02076: 10229-11765
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010672_020 0.0 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
2 Hb_011310_110 0.0463836768 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
3 Hb_000705_230 0.0594570516 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
4 Hb_000665_170 0.060362856 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
5 Hb_000395_110 0.0629576583 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
6 Hb_007545_010 0.0737106936 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
7 Hb_006120_050 0.0745467602 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
8 Hb_000260_510 0.0753861008 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
9 Hb_000256_230 0.0783976072 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
10 Hb_000023_300 0.081428006 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
11 Hb_003777_030 0.0821980799 - - Exocyst complex component, putative [Ricinus communis]
12 Hb_001754_020 0.0823459255 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
13 Hb_002272_240 0.083663956 - - catalytic, putative [Ricinus communis]
14 Hb_000197_020 0.0859647596 - - PREDICTED: protein RER1A [Jatropha curcas]
15 Hb_000815_300 0.0863918714 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
16 Hb_002552_040 0.0893349092 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
17 Hb_185830_060 0.0909842211 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
18 Hb_028928_010 0.0912307868 - - hypothetical protein CISIN_1g0030132mg, partial [Citrus sinensis]
19 Hb_001633_200 0.0917405124 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
20 Hb_006970_020 0.091896063 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]

Gene co-expression network

sample Hb_010672_020 Hb_010672_020 Hb_011310_110 Hb_011310_110 Hb_010672_020--Hb_011310_110 Hb_000705_230 Hb_000705_230 Hb_010672_020--Hb_000705_230 Hb_000665_170 Hb_000665_170 Hb_010672_020--Hb_000665_170 Hb_000395_110 Hb_000395_110 Hb_010672_020--Hb_000395_110 Hb_007545_010 Hb_007545_010 Hb_010672_020--Hb_007545_010 Hb_006120_050 Hb_006120_050 Hb_010672_020--Hb_006120_050 Hb_011310_110--Hb_006120_050 Hb_011310_110--Hb_007545_010 Hb_000049_020 Hb_000049_020 Hb_011310_110--Hb_000049_020 Hb_011310_110--Hb_000705_230 Hb_011310_110--Hb_000665_170 Hb_001633_200 Hb_001633_200 Hb_000705_230--Hb_001633_200 Hb_000703_190 Hb_000703_190 Hb_000705_230--Hb_000703_190 Hb_000197_020 Hb_000197_020 Hb_000705_230--Hb_000197_020 Hb_000069_640 Hb_000069_640 Hb_000705_230--Hb_000069_640 Hb_000256_230 Hb_000256_230 Hb_000665_170--Hb_000256_230 Hb_003777_030 Hb_003777_030 Hb_000665_170--Hb_003777_030 Hb_003209_130 Hb_003209_130 Hb_000665_170--Hb_003209_130 Hb_000665_170--Hb_007545_010 Hb_000389_030 Hb_000389_030 Hb_000665_170--Hb_000389_030 Hb_000260_510 Hb_000260_510 Hb_000395_110--Hb_000260_510 Hb_185830_060 Hb_185830_060 Hb_000395_110--Hb_185830_060 Hb_000979_130 Hb_000979_130 Hb_000395_110--Hb_000979_130 Hb_000665_180 Hb_000665_180 Hb_000395_110--Hb_000665_180 Hb_002193_060 Hb_002193_060 Hb_000395_110--Hb_002193_060 Hb_007545_010--Hb_003777_030 Hb_000815_300 Hb_000815_300 Hb_007545_010--Hb_000815_300 Hb_006970_020 Hb_006970_020 Hb_007545_010--Hb_006970_020 Hb_000139_080 Hb_000139_080 Hb_007545_010--Hb_000139_080 Hb_030982_010 Hb_030982_010 Hb_006120_050--Hb_030982_010 Hb_002272_240 Hb_002272_240 Hb_006120_050--Hb_002272_240 Hb_002687_180 Hb_002687_180 Hb_006120_050--Hb_002687_180 Hb_121089_030 Hb_121089_030 Hb_006120_050--Hb_121089_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.224 8.67706 14.0844 22.7712 4.75766 5.85796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.37689 5.51513 8.22425 9.8223 14.0353

CAGE analysis