Hb_000260_510

Information

Type -
Description -
Location Contig260: 350687-356295
Sequence    

Annotation

kegg
ID rcu:RCOM_1323560
description Glycosyltransferase QUASIMODO1, putative
nr
ID XP_012090956.1
description PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
swissprot
ID Q9ZVI7
description Probable galacturonosyltransferase 7 OS=Arabidopsis thaliana GN=GAUT7 PE=1 SV=2
trembl
ID A0A067JP82
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_00597 PE=3 SV=1
Gene Ontology
ID GO:0000139
description probable galacturonosyltransferase 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27011: 338531-353404 , PASA_asmbl_27012: 353890-356348
cDNA
(Sanger)
(ID:Location)		 010_J23.ab1: 339390-351434

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_510 0.0 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
2 Hb_000395_110 0.0505245938 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
3 Hb_000979_130 0.0665524899 - - PREDICTED: phosphoglucomutase, cytoplasmic [Jatropha curcas]
4 Hb_010672_020 0.0753861008 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
5 Hb_000367_180 0.0780548651 - - Heparanase-2, putative [Ricinus communis]
6 Hb_000007_060 0.0889254151 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 1-like isoform X1 [Jatropha curcas]
7 Hb_001507_120 0.0911374036 - - transcription factor, putative [Ricinus communis]
8 Hb_021576_070 0.0919857872 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
9 Hb_015884_020 0.0925468122 - - PREDICTED: protein PIR [Jatropha curcas]
10 Hb_007416_070 0.0925561894 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
11 Hb_000494_030 0.0931927793 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
12 Hb_000665_170 0.0935617549 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
13 Hb_000256_230 0.0935747156 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
14 Hb_019654_020 0.0959212924 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
15 Hb_000035_220 0.0961902066 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
16 Hb_000390_050 0.0963014343 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
17 Hb_007416_210 0.0971933335 - - PREDICTED: coatomer subunit beta-1 [Jatropha curcas]
18 Hb_002193_060 0.0992764091 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
19 Hb_116349_120 0.1003870859 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_065968_010 0.1015195582 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_510 Hb_000260_510 Hb_000395_110 Hb_000395_110 Hb_000260_510--Hb_000395_110 Hb_000979_130 Hb_000979_130 Hb_000260_510--Hb_000979_130 Hb_010672_020 Hb_010672_020 Hb_000260_510--Hb_010672_020 Hb_000367_180 Hb_000367_180 Hb_000260_510--Hb_000367_180 Hb_000007_060 Hb_000007_060 Hb_000260_510--Hb_000007_060 Hb_001507_120 Hb_001507_120 Hb_000260_510--Hb_001507_120 Hb_000395_110--Hb_010672_020 Hb_185830_060 Hb_185830_060 Hb_000395_110--Hb_185830_060 Hb_000395_110--Hb_000979_130 Hb_000665_180 Hb_000665_180 Hb_000395_110--Hb_000665_180 Hb_002193_060 Hb_002193_060 Hb_000395_110--Hb_002193_060 Hb_005694_060 Hb_005694_060 Hb_000979_130--Hb_005694_060 Hb_000979_130--Hb_000367_180 Hb_015884_020 Hb_015884_020 Hb_000979_130--Hb_015884_020 Hb_019654_020 Hb_019654_020 Hb_000979_130--Hb_019654_020 Hb_011310_110 Hb_011310_110 Hb_010672_020--Hb_011310_110 Hb_000705_230 Hb_000705_230 Hb_010672_020--Hb_000705_230 Hb_000665_170 Hb_000665_170 Hb_010672_020--Hb_000665_170 Hb_007545_010 Hb_007545_010 Hb_010672_020--Hb_007545_010 Hb_006120_050 Hb_006120_050 Hb_010672_020--Hb_006120_050 Hb_000367_180--Hb_019654_020 Hb_000367_180--Hb_000007_060 Hb_065968_010 Hb_065968_010 Hb_000367_180--Hb_065968_010 Hb_000367_180--Hb_015884_020 Hb_000007_060--Hb_019654_020 Hb_000007_060--Hb_015884_020 Hb_106890_010 Hb_106890_010 Hb_000007_060--Hb_106890_010 Hb_000007_060--Hb_000979_130 Hb_001633_200 Hb_001633_200 Hb_001507_120--Hb_001633_200 Hb_001957_010 Hb_001957_010 Hb_001507_120--Hb_001957_010 Hb_001507_120--Hb_065968_010 Hb_000395_280 Hb_000395_280 Hb_001507_120--Hb_000395_280 Hb_003777_200 Hb_003777_200 Hb_001507_120--Hb_003777_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82503 2.97605 6.17588 12.1122 2.05448 2.14168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51844 2.00367 4.27982 6.08046 7.75801

CAGE analysis