Hb_002193_060

Information

Type -
Description -
Location Contig2193: 55739-59286
Sequence    

Annotation

kegg
ID pxb:103947769
description uncharacterized protein C4orf29 homolog
nr
ID XP_009356993.1
description PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
swissprot
ID Q8C1A9
description Uncharacterized protein C4orf29 homolog OS=Mus musculus PE=2 SV=1
trembl
ID A0A0B0MW17
description Uncharacterized protein OS=Gossypium arboreum GN=F383_27047 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22577: 55780-59341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002193_060 0.0 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
2 Hb_185830_060 0.0604174068 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
3 Hb_000375_300 0.0694840683 - - PREDICTED: cyanate hydratase [Jatropha curcas]
4 Hb_000395_110 0.0800165083 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
5 Hb_018845_010 0.0858814035 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
6 Hb_000007_090 0.0864940644 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
7 Hb_007416_070 0.0876388071 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
8 Hb_002007_320 0.0891677644 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
9 Hb_000665_180 0.0907570445 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
10 Hb_000057_110 0.092501176 - - PREDICTED: kinesin-13A [Jatropha curcas]
11 Hb_000367_180 0.0950338427 - - Heparanase-2, putative [Ricinus communis]
12 Hb_000510_170 0.0955729176 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
13 Hb_005701_120 0.0966388916 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
14 Hb_011486_060 0.0977434394 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001619_060 0.0979467724 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
16 Hb_001486_040 0.0980736172 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
17 Hb_008725_270 0.0991212504 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
18 Hb_000260_510 0.0992764091 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
19 Hb_000665_170 0.0996821528 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
20 Hb_003994_030 0.100857803 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]

Gene co-expression network

sample Hb_002193_060 Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_002193_060--Hb_185830_060 Hb_000375_300 Hb_000375_300 Hb_002193_060--Hb_000375_300 Hb_000395_110 Hb_000395_110 Hb_002193_060--Hb_000395_110 Hb_018845_010 Hb_018845_010 Hb_002193_060--Hb_018845_010 Hb_000007_090 Hb_000007_090 Hb_002193_060--Hb_000007_090 Hb_007416_070 Hb_007416_070 Hb_002193_060--Hb_007416_070 Hb_001486_040 Hb_001486_040 Hb_185830_060--Hb_001486_040 Hb_185830_060--Hb_000395_110 Hb_005993_010 Hb_005993_010 Hb_185830_060--Hb_005993_010 Hb_000665_180 Hb_000665_180 Hb_185830_060--Hb_000665_180 Hb_005701_120 Hb_005701_120 Hb_185830_060--Hb_005701_120 Hb_000375_300--Hb_018845_010 Hb_000375_300--Hb_000007_090 Hb_001619_060 Hb_001619_060 Hb_000375_300--Hb_001619_060 Hb_116349_120 Hb_116349_120 Hb_000375_300--Hb_116349_120 Hb_008725_270 Hb_008725_270 Hb_000375_300--Hb_008725_270 Hb_000260_510 Hb_000260_510 Hb_000395_110--Hb_000260_510 Hb_010672_020 Hb_010672_020 Hb_000395_110--Hb_010672_020 Hb_000979_130 Hb_000979_130 Hb_000395_110--Hb_000979_130 Hb_000395_110--Hb_000665_180 Hb_000009_060 Hb_000009_060 Hb_018845_010--Hb_000009_060 Hb_004218_130 Hb_004218_130 Hb_018845_010--Hb_004218_130 Hb_018845_010--Hb_007416_070 Hb_001616_070 Hb_001616_070 Hb_018845_010--Hb_001616_070 Hb_000585_110 Hb_000585_110 Hb_000007_090--Hb_000585_110 Hb_002687_200 Hb_002687_200 Hb_000007_090--Hb_002687_200 Hb_003680_220 Hb_003680_220 Hb_000007_090--Hb_003680_220 Hb_002249_080 Hb_002249_080 Hb_000007_090--Hb_002249_080 Hb_000007_090--Hb_008725_270 Hb_019654_020 Hb_019654_020 Hb_000007_090--Hb_019654_020 Hb_000703_330 Hb_000703_330 Hb_007416_070--Hb_000703_330 Hb_000683_050 Hb_000683_050 Hb_007416_070--Hb_000683_050 Hb_007416_070--Hb_000009_060 Hb_000197_190 Hb_000197_190 Hb_007416_070--Hb_000197_190 Hb_000367_180 Hb_000367_180 Hb_007416_070--Hb_000367_180 Hb_001811_170 Hb_001811_170 Hb_007416_070--Hb_001811_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47555 3.32297 9.30491 13.9726 1.7586 2.2374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.65011 4.73253 3.86051 6.61382 8.0059

CAGE analysis