Hb_018845_010

Information

Type -
Description -
Location Contig18845: 1797-2489
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13190g
description POPTRDRAFT_769624; hypothetical protein
nr
ID XP_012082125.1
description PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
swissprot
ID O14099
description Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=3 SV=1
trembl
ID A0A067KC71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18365 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018845_010 0.0 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
2 Hb_000375_300 0.0705198058 - - PREDICTED: cyanate hydratase [Jatropha curcas]
3 Hb_000009_060 0.0757034684 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
4 Hb_002193_060 0.0858814035 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
5 Hb_004218_130 0.0865018402 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
6 Hb_007416_070 0.0878104486 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
7 Hb_001616_070 0.091206236 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
8 Hb_004223_140 0.0920497551 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
9 Hb_002028_190 0.0949153796 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
10 Hb_002739_120 0.0952564921 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
11 Hb_000116_560 0.0956075647 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
12 Hb_007537_030 0.096214617 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
13 Hb_000753_160 0.0965843044 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
14 Hb_000665_170 0.0967246201 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
15 Hb_000703_330 0.0975607381 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003929_180 0.0989222527 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
17 Hb_002687_200 0.0992677663 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001250_050 0.1001188485 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
19 Hb_008725_270 0.1009643767 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
20 Hb_000173_130 0.1025144816 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_018845_010 Hb_018845_010 Hb_000375_300 Hb_000375_300 Hb_018845_010--Hb_000375_300 Hb_000009_060 Hb_000009_060 Hb_018845_010--Hb_000009_060 Hb_002193_060 Hb_002193_060 Hb_018845_010--Hb_002193_060 Hb_004218_130 Hb_004218_130 Hb_018845_010--Hb_004218_130 Hb_007416_070 Hb_007416_070 Hb_018845_010--Hb_007416_070 Hb_001616_070 Hb_001616_070 Hb_018845_010--Hb_001616_070 Hb_000375_300--Hb_002193_060 Hb_000007_090 Hb_000007_090 Hb_000375_300--Hb_000007_090 Hb_001619_060 Hb_001619_060 Hb_000375_300--Hb_001619_060 Hb_116349_120 Hb_116349_120 Hb_000375_300--Hb_116349_120 Hb_008725_270 Hb_008725_270 Hb_000375_300--Hb_008725_270 Hb_000009_060--Hb_001616_070 Hb_001021_010 Hb_001021_010 Hb_000009_060--Hb_001021_010 Hb_000703_330 Hb_000703_330 Hb_000009_060--Hb_000703_330 Hb_000009_060--Hb_007416_070 Hb_000389_030 Hb_000389_030 Hb_000009_060--Hb_000389_030 Hb_185830_060 Hb_185830_060 Hb_002193_060--Hb_185830_060 Hb_000395_110 Hb_000395_110 Hb_002193_060--Hb_000395_110 Hb_002193_060--Hb_000007_090 Hb_002193_060--Hb_007416_070 Hb_000098_180 Hb_000098_180 Hb_004218_130--Hb_000098_180 Hb_001545_130 Hb_001545_130 Hb_004218_130--Hb_001545_130 Hb_003929_180 Hb_003929_180 Hb_004218_130--Hb_003929_180 Hb_000000_480 Hb_000000_480 Hb_004218_130--Hb_000000_480 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120 Hb_007416_070--Hb_000703_330 Hb_000683_050 Hb_000683_050 Hb_007416_070--Hb_000683_050 Hb_000197_190 Hb_000197_190 Hb_007416_070--Hb_000197_190 Hb_000367_180 Hb_000367_180 Hb_007416_070--Hb_000367_180 Hb_001811_170 Hb_001811_170 Hb_007416_070--Hb_001811_170 Hb_003683_130 Hb_003683_130 Hb_001616_070--Hb_003683_130 Hb_001616_070--Hb_000703_330 Hb_000220_110 Hb_000220_110 Hb_001616_070--Hb_000220_110 Hb_001616_070--Hb_000197_190 Hb_001616_070--Hb_007416_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01623 4.98762 9.71473 14.807 1.97542 2.31251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.19896 3.93541 3.12486 7.74191 6.35827

CAGE analysis