Hb_003929_180

Information

Type -
Description -
Location Contig3929: 99477-106318
Sequence    

Annotation

kegg
ID gmx:100812996
description probable sugar phosphate/phosphate translocator At3g17430-like
nr
ID XP_003533814.1
description PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
swissprot
ID Q9LRP2
description Probable sugar phosphate/phosphate translocator At3g17430 OS=Arabidopsis thaliana GN=At3g17430 PE=1 SV=1
trembl
ID A0A0B2RL42
description Putative sugar phosphate/phosphate translocator OS=Glycine soja GN=glysoja_045530 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sugar phosphate phosphate translocator at3g17430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39363: 99493-106422 , PASA_asmbl_39364: 99502-106438 , PASA_asmbl_39365: 105746-106435
cDNA
(Sanger)
(ID:Location)		 025_F15.ab1: 104724-106422

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_180 0.0 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
2 Hb_004032_210 0.0773060665 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008725_270 0.0779977366 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
4 Hb_004223_140 0.0791734715 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
5 Hb_004218_130 0.0899789375 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
6 Hb_000012_080 0.0960935283 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
7 Hb_006351_020 0.0984697683 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
8 Hb_018845_010 0.0989222527 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
9 Hb_008025_010 0.0993632236 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
10 Hb_001545_130 0.0995211453 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
11 Hb_003540_080 0.1010475767 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_005074_040 0.1036442883 - - ATP binding protein, putative [Ricinus communis]
13 Hb_003680_220 0.103765882 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
14 Hb_002942_230 0.1050066674 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
15 Hb_011214_110 0.106656984 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
16 Hb_000375_300 0.1079407628 - - PREDICTED: cyanate hydratase [Jatropha curcas]
17 Hb_002687_200 0.1085963943 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002028_190 0.1091943533 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
19 Hb_000003_030 0.1107422905 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_004109_050 0.1111271404 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_003929_180 Hb_003929_180 Hb_004032_210 Hb_004032_210 Hb_003929_180--Hb_004032_210 Hb_008725_270 Hb_008725_270 Hb_003929_180--Hb_008725_270 Hb_004223_140 Hb_004223_140 Hb_003929_180--Hb_004223_140 Hb_004218_130 Hb_004218_130 Hb_003929_180--Hb_004218_130 Hb_000012_080 Hb_000012_080 Hb_003929_180--Hb_000012_080 Hb_006351_020 Hb_006351_020 Hb_003929_180--Hb_006351_020 Hb_004032_210--Hb_004223_140 Hb_001545_130 Hb_001545_130 Hb_004032_210--Hb_001545_130 Hb_004032_210--Hb_006351_020 Hb_000003_030 Hb_000003_030 Hb_004032_210--Hb_000003_030 Hb_019654_060 Hb_019654_060 Hb_004032_210--Hb_019654_060 Hb_003680_220 Hb_003680_220 Hb_008725_270--Hb_003680_220 Hb_000007_090 Hb_000007_090 Hb_008725_270--Hb_000007_090 Hb_002687_200 Hb_002687_200 Hb_008725_270--Hb_002687_200 Hb_000926_060 Hb_000926_060 Hb_008725_270--Hb_000926_060 Hb_000500_220 Hb_000500_220 Hb_008725_270--Hb_000500_220 Hb_002028_190 Hb_002028_190 Hb_004223_140--Hb_002028_190 Hb_018845_010 Hb_018845_010 Hb_004223_140--Hb_018845_010 Hb_004223_140--Hb_000012_080 Hb_004223_140--Hb_006351_020 Hb_000098_180 Hb_000098_180 Hb_004218_130--Hb_000098_180 Hb_004218_130--Hb_001545_130 Hb_004218_130--Hb_018845_010 Hb_000000_480 Hb_000000_480 Hb_004218_130--Hb_000000_480 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120 Hb_006829_060 Hb_006829_060 Hb_000012_080--Hb_006829_060 Hb_000057_110 Hb_000057_110 Hb_000012_080--Hb_000057_110 Hb_001188_100 Hb_001188_100 Hb_000012_080--Hb_001188_100 Hb_005074_040 Hb_005074_040 Hb_000012_080--Hb_005074_040 Hb_000665_180 Hb_000665_180 Hb_000012_080--Hb_000665_180 Hb_000395_110 Hb_000395_110 Hb_000012_080--Hb_000395_110 Hb_001119_070 Hb_001119_070 Hb_006351_020--Hb_001119_070 Hb_006351_020--Hb_001545_130 Hb_000152_190 Hb_000152_190 Hb_006351_020--Hb_000152_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.09107 6.85412 24.0396 32.6819 5.60662 3.51465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.37536 4.13109 6.6246 13.8117 15.8522

CAGE analysis