Hb_002028_190

Information

Type -
Description -
Location Contig2028: 204851-209234
Sequence    

Annotation

kegg
ID rcu:RCOM_0708270
description 26S protease regulatory subunit, putative (EC:3.6.4.3)
nr
ID XP_012077143.1
description PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
swissprot
ID O64982
description 26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1
trembl
ID A0A067KG48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07559 PE=3 SV=1
Gene Ontology
ID GO:0000502
description 26s protease regulatory subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20771: 204855-209161 , PASA_asmbl_20772: 205164-209096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002028_190 0.0 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
2 Hb_004223_140 0.0827105964 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
3 Hb_000009_060 0.0853239442 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
4 Hb_004228_120 0.0899159706 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
5 Hb_002552_040 0.0918935036 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
6 Hb_018845_010 0.0949153796 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
7 Hb_001616_070 0.0999877987 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
8 Hb_065968_010 0.1015996758 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
9 Hb_000389_030 0.103918887 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
10 Hb_000665_170 0.104751053 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
11 Hb_000656_160 0.1052175646 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
12 Hb_000395_280 0.1068067541 - - PREDICTED: thioredoxin-related transmembrane protein 2 [Vitis vinifera]
13 Hb_000260_400 0.1073975454 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
14 Hb_000260_510 0.1089539734 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
15 Hb_003929_180 0.1091943533 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
16 Hb_010672_020 0.1092326475 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
17 Hb_000705_230 0.1096064556 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
18 Hb_001633_200 0.1099906674 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
19 Hb_000256_230 0.1101211601 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
20 Hb_000703_330 0.1111005878 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002028_190 Hb_002028_190 Hb_004223_140 Hb_004223_140 Hb_002028_190--Hb_004223_140 Hb_000009_060 Hb_000009_060 Hb_002028_190--Hb_000009_060 Hb_004228_120 Hb_004228_120 Hb_002028_190--Hb_004228_120 Hb_002552_040 Hb_002552_040 Hb_002028_190--Hb_002552_040 Hb_018845_010 Hb_018845_010 Hb_002028_190--Hb_018845_010 Hb_001616_070 Hb_001616_070 Hb_002028_190--Hb_001616_070 Hb_003929_180 Hb_003929_180 Hb_004223_140--Hb_003929_180 Hb_004032_210 Hb_004032_210 Hb_004223_140--Hb_004032_210 Hb_004223_140--Hb_018845_010 Hb_000012_080 Hb_000012_080 Hb_004223_140--Hb_000012_080 Hb_006351_020 Hb_006351_020 Hb_004223_140--Hb_006351_020 Hb_000009_060--Hb_001616_070 Hb_001021_010 Hb_001021_010 Hb_000009_060--Hb_001021_010 Hb_000703_330 Hb_000703_330 Hb_000009_060--Hb_000703_330 Hb_000009_060--Hb_018845_010 Hb_007416_070 Hb_007416_070 Hb_000009_060--Hb_007416_070 Hb_000389_030 Hb_000389_030 Hb_000009_060--Hb_000389_030 Hb_001279_190 Hb_001279_190 Hb_004228_120--Hb_001279_190 Hb_002687_180 Hb_002687_180 Hb_004228_120--Hb_002687_180 Hb_004228_120--Hb_002552_040 Hb_159809_070 Hb_159809_070 Hb_004228_120--Hb_159809_070 Hb_001227_120 Hb_001227_120 Hb_004228_120--Hb_001227_120 Hb_011716_010 Hb_011716_010 Hb_004228_120--Hb_011716_010 Hb_000815_300 Hb_000815_300 Hb_002552_040--Hb_000815_300 Hb_002552_040--Hb_002687_180 Hb_002552_040--Hb_001279_190 Hb_065968_010 Hb_065968_010 Hb_002552_040--Hb_065968_010 Hb_006970_020 Hb_006970_020 Hb_002552_040--Hb_006970_020 Hb_000375_300 Hb_000375_300 Hb_018845_010--Hb_000375_300 Hb_002193_060 Hb_002193_060 Hb_018845_010--Hb_002193_060 Hb_004218_130 Hb_004218_130 Hb_018845_010--Hb_004218_130 Hb_018845_010--Hb_007416_070 Hb_018845_010--Hb_001616_070 Hb_003683_130 Hb_003683_130 Hb_001616_070--Hb_003683_130 Hb_001616_070--Hb_000703_330 Hb_000220_110 Hb_000220_110 Hb_001616_070--Hb_000220_110 Hb_000197_190 Hb_000197_190 Hb_001616_070--Hb_000197_190 Hb_001616_070--Hb_007416_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.05045 9.0324 28.0906 38.5663 7.36747 9.68031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.45015 8.39822 13.143 21.3291 16.0297

CAGE analysis