Hb_004223_140

Information

Type -
Description -
Location Contig4223: 66451-71016
Sequence    

Annotation

kegg
ID rcu:RCOM_1597400
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_002510516.1
description endo-1,4-beta-glucanase, putative [Ricinus communis]
swissprot
ID Q69SG5
description Endoglucanase 24 OS=Oryza sativa subsp. japonica GN=Os09g0533900 PE=2 SV=1
trembl
ID B9R873
description Endoglucanase OS=Ricinus communis GN=RCOM_1597400 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glycosyl hydrolase family 9 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41761: 68983-69219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_140 0.0 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
2 Hb_003929_180 0.0791734715 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
3 Hb_002028_190 0.0827105964 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
4 Hb_004032_210 0.0828092508 - - conserved hypothetical protein [Ricinus communis]
5 Hb_018845_010 0.0920497551 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
6 Hb_000012_080 0.0980996678 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
7 Hb_006351_020 0.100060329 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
8 Hb_004218_130 0.1018392004 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
9 Hb_008725_270 0.1022362047 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
10 Hb_011214_110 0.104969794 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
11 Hb_000152_190 0.1084183858 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
12 Hb_001545_130 0.1101348432 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
13 Hb_004109_050 0.1111356671 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
14 Hb_003540_080 0.1131284731 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_005074_040 0.1141961566 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000375_300 0.1145252005 - - PREDICTED: cyanate hydratase [Jatropha curcas]
17 Hb_000395_110 0.1156033306 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
18 Hb_002193_060 0.1168114418 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
19 Hb_000009_060 0.117111262 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
20 Hb_021576_070 0.1181663945 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]

Gene co-expression network

sample Hb_004223_140 Hb_004223_140 Hb_003929_180 Hb_003929_180 Hb_004223_140--Hb_003929_180 Hb_002028_190 Hb_002028_190 Hb_004223_140--Hb_002028_190 Hb_004032_210 Hb_004032_210 Hb_004223_140--Hb_004032_210 Hb_018845_010 Hb_018845_010 Hb_004223_140--Hb_018845_010 Hb_000012_080 Hb_000012_080 Hb_004223_140--Hb_000012_080 Hb_006351_020 Hb_006351_020 Hb_004223_140--Hb_006351_020 Hb_003929_180--Hb_004032_210 Hb_008725_270 Hb_008725_270 Hb_003929_180--Hb_008725_270 Hb_004218_130 Hb_004218_130 Hb_003929_180--Hb_004218_130 Hb_003929_180--Hb_000012_080 Hb_003929_180--Hb_006351_020 Hb_000009_060 Hb_000009_060 Hb_002028_190--Hb_000009_060 Hb_004228_120 Hb_004228_120 Hb_002028_190--Hb_004228_120 Hb_002552_040 Hb_002552_040 Hb_002028_190--Hb_002552_040 Hb_002028_190--Hb_018845_010 Hb_001616_070 Hb_001616_070 Hb_002028_190--Hb_001616_070 Hb_001545_130 Hb_001545_130 Hb_004032_210--Hb_001545_130 Hb_004032_210--Hb_006351_020 Hb_000003_030 Hb_000003_030 Hb_004032_210--Hb_000003_030 Hb_019654_060 Hb_019654_060 Hb_004032_210--Hb_019654_060 Hb_000375_300 Hb_000375_300 Hb_018845_010--Hb_000375_300 Hb_018845_010--Hb_000009_060 Hb_002193_060 Hb_002193_060 Hb_018845_010--Hb_002193_060 Hb_018845_010--Hb_004218_130 Hb_007416_070 Hb_007416_070 Hb_018845_010--Hb_007416_070 Hb_018845_010--Hb_001616_070 Hb_006829_060 Hb_006829_060 Hb_000012_080--Hb_006829_060 Hb_000057_110 Hb_000057_110 Hb_000012_080--Hb_000057_110 Hb_001188_100 Hb_001188_100 Hb_000012_080--Hb_001188_100 Hb_005074_040 Hb_005074_040 Hb_000012_080--Hb_005074_040 Hb_000665_180 Hb_000665_180 Hb_000012_080--Hb_000665_180 Hb_000395_110 Hb_000395_110 Hb_000012_080--Hb_000395_110 Hb_001119_070 Hb_001119_070 Hb_006351_020--Hb_001119_070 Hb_006351_020--Hb_001545_130 Hb_000152_190 Hb_000152_190 Hb_006351_020--Hb_000152_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.848467 1.6146 5.68865 7.98149 0.810949 1.56393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.757534 1.29153 2.00138 3.29185 3.52813

CAGE analysis