Hb_001545_130

Information

Type -
Description -
Location Contig1545: 151959-157382
Sequence    

Annotation

kegg
ID rcu:RCOM_0297100
description sur2 hydroxylase/desaturase, putative (EC:1.14.13.72)
nr
ID XP_002527113.1
description sur2 hydroxylase/desaturase, putative [Ricinus communis]
swissprot
ID Q9AST3
description Sphinganine C(4)-monooxygenase 2 OS=Arabidopsis thaliana GN=SBH2 PE=1 SV=1
trembl
ID B9SM94
description Sur2 hydroxylase/desaturase, putative OS=Ricinus communis GN=RCOM_0297100 PE=4 SV=1
Gene Ontology
ID GO:0016021
description sphinganine c -monooxygenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13364: 151971-157334 , PASA_asmbl_13366: 155367-155606 , PASA_asmbl_13367: 155695-155977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_130 0.0 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
2 Hb_004218_130 0.0860799983 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
3 Hb_147245_010 0.0867830161 - - casein kinase, putative [Ricinus communis]
4 Hb_000003_030 0.0902195768 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_004109_050 0.0926537536 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
6 Hb_006351_020 0.0961901446 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
7 Hb_004032_210 0.0984217505 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003929_180 0.0995211453 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
9 Hb_000152_710 0.1005915761 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
10 Hb_000062_530 0.1006071585 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
11 Hb_007537_030 0.1045681091 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
12 Hb_002641_160 0.1077514359 - - conserved hypothetical protein [Ricinus communis]
13 Hb_021576_070 0.1096143929 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
14 Hb_004223_140 0.1101348432 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
15 Hb_018845_010 0.1102062651 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
16 Hb_010050_020 0.1110725707 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
17 Hb_003710_020 0.1125331118 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
18 Hb_034507_060 0.1152726177 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
19 Hb_012760_090 0.1160705933 - - Aspartic proteinase-like protein 1 [Morus notabilis]
20 Hb_004522_030 0.117884838 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001545_130 Hb_001545_130 Hb_004218_130 Hb_004218_130 Hb_001545_130--Hb_004218_130 Hb_147245_010 Hb_147245_010 Hb_001545_130--Hb_147245_010 Hb_000003_030 Hb_000003_030 Hb_001545_130--Hb_000003_030 Hb_004109_050 Hb_004109_050 Hb_001545_130--Hb_004109_050 Hb_006351_020 Hb_006351_020 Hb_001545_130--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001545_130--Hb_004032_210 Hb_000098_180 Hb_000098_180 Hb_004218_130--Hb_000098_180 Hb_018845_010 Hb_018845_010 Hb_004218_130--Hb_018845_010 Hb_003929_180 Hb_003929_180 Hb_004218_130--Hb_003929_180 Hb_000000_480 Hb_000000_480 Hb_004218_130--Hb_000000_480 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120 Hb_002235_060 Hb_002235_060 Hb_147245_010--Hb_002235_060 Hb_007537_030 Hb_007537_030 Hb_147245_010--Hb_007537_030 Hb_000928_120 Hb_000928_120 Hb_147245_010--Hb_000928_120 Hb_147245_010--Hb_004109_050 Hb_000152_710 Hb_000152_710 Hb_147245_010--Hb_000152_710 Hb_019654_060 Hb_019654_060 Hb_000003_030--Hb_019654_060 Hb_003430_080 Hb_003430_080 Hb_000003_030--Hb_003430_080 Hb_000003_030--Hb_004032_210 Hb_000581_030 Hb_000581_030 Hb_000003_030--Hb_000581_030 Hb_000000_330 Hb_000000_330 Hb_000003_030--Hb_000000_330 Hb_021576_070 Hb_021576_070 Hb_004109_050--Hb_021576_070 Hb_004109_050--Hb_000152_710 Hb_001754_020 Hb_001754_020 Hb_004109_050--Hb_001754_020 Hb_000570_020 Hb_000570_020 Hb_004109_050--Hb_000570_020 Hb_000395_110 Hb_000395_110 Hb_004109_050--Hb_000395_110 Hb_001119_070 Hb_001119_070 Hb_006351_020--Hb_001119_070 Hb_006351_020--Hb_003929_180 Hb_004223_140 Hb_004223_140 Hb_006351_020--Hb_004223_140 Hb_006351_020--Hb_004032_210 Hb_000152_190 Hb_000152_190 Hb_006351_020--Hb_000152_190 Hb_004032_210--Hb_003929_180 Hb_004032_210--Hb_004223_140 Hb_004032_210--Hb_019654_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.32521 6.13768 12.6307 24.2824 1.75371 2.78597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25262 1.78584 3.19597 10.5117 8.72775

CAGE analysis