Hb_000000_480

Information

Type -
Description -
Location Contig0: 702954-708555
Sequence    

Annotation

kegg
ID vvi:100245551
description deSI-like protein At4g17486
nr
ID XP_012071797.1
description PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID A0A067L2Z4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04399 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00098: 705347-708379 , PASA_asmbl_00100: 707126-707226 , PASA_asmbl_00101: 708238-708362 , PASA_asmbl_00102: 703058-707073
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_480 0.0 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
2 Hb_004218_130 0.0925021214 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
3 Hb_012762_040 0.1017543303 - - big map kinase/bmk, putative [Ricinus communis]
4 Hb_000622_330 0.1061027637 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
5 Hb_000098_180 0.1069260426 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
6 Hb_000928_120 0.1110342484 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
7 Hb_029253_010 0.1117546026 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
8 Hb_000922_320 0.1120088548 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
9 Hb_012760_090 0.113216377 - - Aspartic proteinase-like protein 1 [Morus notabilis]
10 Hb_002641_160 0.1145312642 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002281_010 0.1156868523 - - hypothetical protein POPTR_0001s47550g [Populus trichocarpa]
12 Hb_002235_060 0.1159262577 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
13 Hb_000032_410 0.1169926616 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
14 Hb_091318_010 0.1191352886 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
15 Hb_003894_030 0.1191981789 - - plant sec1, putative [Ricinus communis]
16 Hb_005357_110 0.119202999 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
17 Hb_002325_060 0.1204030184 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
18 Hb_000197_180 0.1210800109 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
19 Hb_011671_340 0.1212955659 - - small GTPase [Hevea brasiliensis]
20 Hb_003670_030 0.1214833666 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_480 Hb_000000_480 Hb_004218_130 Hb_004218_130 Hb_000000_480--Hb_004218_130 Hb_012762_040 Hb_012762_040 Hb_000000_480--Hb_012762_040 Hb_000622_330 Hb_000622_330 Hb_000000_480--Hb_000622_330 Hb_000098_180 Hb_000098_180 Hb_000000_480--Hb_000098_180 Hb_000928_120 Hb_000928_120 Hb_000000_480--Hb_000928_120 Hb_029253_010 Hb_029253_010 Hb_000000_480--Hb_029253_010 Hb_004218_130--Hb_000098_180 Hb_001545_130 Hb_001545_130 Hb_004218_130--Hb_001545_130 Hb_018845_010 Hb_018845_010 Hb_004218_130--Hb_018845_010 Hb_003929_180 Hb_003929_180 Hb_004218_130--Hb_003929_180 Hb_002739_120 Hb_002739_120 Hb_004218_130--Hb_002739_120 Hb_000979_140 Hb_000979_140 Hb_012762_040--Hb_000979_140 Hb_001865_100 Hb_001865_100 Hb_012762_040--Hb_001865_100 Hb_001729_020 Hb_001729_020 Hb_012762_040--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_012762_040--Hb_000197_180 Hb_012762_040--Hb_000098_180 Hb_010050_020 Hb_010050_020 Hb_000622_330--Hb_010050_020 Hb_000622_330--Hb_000928_120 Hb_006120_060 Hb_006120_060 Hb_000622_330--Hb_006120_060 Hb_002217_080 Hb_002217_080 Hb_000622_330--Hb_002217_080 Hb_004522_030 Hb_004522_030 Hb_000622_330--Hb_004522_030 Hb_000589_170 Hb_000589_170 Hb_000098_180--Hb_000589_170 Hb_001117_080 Hb_001117_080 Hb_000098_180--Hb_001117_080 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_002259_220 Hb_002259_220 Hb_000098_180--Hb_002259_220 Hb_011188_010 Hb_011188_010 Hb_000098_180--Hb_011188_010 Hb_000928_120--Hb_004522_030 Hb_000283_140 Hb_000283_140 Hb_000928_120--Hb_000283_140 Hb_003001_130 Hb_003001_130 Hb_000928_120--Hb_003001_130 Hb_000570_020 Hb_000570_020 Hb_000928_120--Hb_000570_020 Hb_007537_030 Hb_007537_030 Hb_000928_120--Hb_007537_030 Hb_005357_110 Hb_005357_110 Hb_029253_010--Hb_005357_110 Hb_003740_020 Hb_003740_020 Hb_029253_010--Hb_003740_020 Hb_000032_410 Hb_000032_410 Hb_029253_010--Hb_000032_410 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_002374_270 Hb_002374_270 Hb_029253_010--Hb_002374_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.884869 8.32197 15.239 16.7863 1.86249 1.11274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04992 2.17737 2.74363 6.09493 7.472

CAGE analysis